I would like to extract x,y,z coordinates of any 3 atoms from a pdb file. How to rectify this error and make it generalized?
5 views (last 30 days)
Show older comments
ubq=getpdb('1UBQ');
for n=[1,2,3]
Q(n)=[ubq.Model.Atom(n).X, ubq.Model.Atom(n).Y, ubq.Model.Atom(n).Z]
end
0 Comments
Accepted Answer
Walter Roberson
on 28 Jan 2023
% N = range of indices for example
N=1:7;
Q = [ubq.Model.Atom(N).X; ubq.Model.Atom(N).Y; ubq.Model.Atom(n).Z].';
This assumes that each X Y Z are scalars.
This code process an array with 3 columns. If 3 rows are acceptable then leave out the .'
More Answers (0)
See Also
Categories
Find more on Bioinformatics Toolbox in Help Center and File Exchange
Products
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!