imread issues when loading large TIFF's

I have large TIFF image files that I am loading (i.e. 80k by 60k by 3 arrays) and when I call portions of them using 'PixelRegion', there seems to be inconsistency when I run it every time. In other words, sometimes I run a y range of 1:1500 and x range of 1:1500 and the program outputs the bottom right of the image, whereas it should output the top left. Sometimes when I do this repeatedly, other portions of the image are outputted. I am not redefining any variables and am simply playing with this in the command line. Has anyone ever had this issue?

[Constantino Carlos Reyes-Aldasoro]

I am having the same problem. I have whole slide images and the location specified by PixelRegion does not match what would be the region if you load the whole image.

Did you find a way around for this?

Obviously I can read the whole image and then crop, but the point is reading only a small region for speed and to avoid memory problems.

[Ashish Uthama]

This smells like a bug! Please do contact technical support to report it.

Answer 1

[Constantino Carlos Reyes-Aldasoro]

Hello

I have found a way around this. Instead of using imread, I used blockedImage

bim= blockedImage(nameOfYourFile);
imLevel1 = getRegion(bim,[1200 900],[1600 1800],Level=2);

And this works well for tiff images with many levels. Hope this helps.

More details here

https://uk.mathworks.com/help/images/ref/blockedimage.getregion.html

https://uk.mathworks.com/help/images/ref/blockedimage.html