reading a binary file into matlab

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I am ruining the following to codes
filelist = dir('E:\4_models\model1');
nt = size(filelist,1);
nx = 508;
ny = 637;
dx = 50;
dy = 50;
zdata = zeros(ny,nx,nt);
for i = nt
fname = filelist(i).name;
a = readcartesiangrid(fname);
contourf(a.x, a.y, a.z, 31);
colorbar
daspect([1 1 1]);
pause(0.1)
z = a.z;
zdata(:,:,i) = z;
end
for i = 2:nt
z1 = zdata(:,:,1);
zi = zdata(:,:,i);
zd = zi - z1;
imagesc(zd);
colorbar
set(gca,'Ydir','normal')
caxis([0 35]);
axis('equal')
pause(0.2)
end
function [ grid ] = readcartesiangrid(fname, nx, ny, dx, dy )
fid = fopen('fname');
version = fread(fid, 1, 'uint32');
assert(version == 2, sprintf('Invalid file version: expected 2, got %i', version));
fclose(fid);
when I execute these two codes, I am getting the following error;
Invalid file identifier. Use fopen to generate a valid file identifier
Error in readcartesiangrid (line 17)
version = fread(fid, 1, 'uint32');

Accepted Answer

James Tursa
James Tursa on 22 May 2018
This line
fid = fopen('fname');
trys to open a file that is named exactly 'fname', which is not what you want. You probably want this:
fid = fopen(fname);

More Answers (1)

OCDER
OCDER on 22 May 2018
Edited: OCDER on 22 May 2018
I think there're other issues despite fixing fid = fopen(fname)
filelist = dir('E:\4_models\model1');
filelist = filelist(~[filelist.isdir]); %You have a /. and /.. folder that needs to be skipped
nt = size(filelist,1); %this gives you 1 number.
...
for i = nt %this will only do the last file. Do you want " for i = 1:nt " instead?
fname = filelist(i).name; %this gives you only the file name, without the file path (ex: model2.mat)
fname = fullfile(filelist(i).folder, filelist(i).name); %this gives you the full file path (ex: E:\4_models\model1\model2.mat)
...
end
In your readcartesiangrid, recommend the following changes:
fid = fopen(fname);
assert(fid ~= -1, 'Error opening the file "%s".', fname) %Add check here to help with debugging
  1 Comment
Abdul Wahab
Abdul Wahab on 22 May 2018
This helped as well. Thank you for the detailed comment!!!

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