GO = geneont ('LIVE', true) doesn't work.

Hello!

I'm trying to download gene_ontology.obo with the help of function geneont().

Line code is

GO = geneont('LIVE', true)

And I have an error :

Error using geneont (line 81)

Unable to download the GO Database.

Java exception occurred:

java.lang.OutOfMemoryError: Java heap space

at java.util.Arrays.copyOf(Unknown Source)

at java.io.ByteArrayOutputStream.toByteArray(Unknown Source)

Please, help!

Answer 1

[Arthur Goldsipe]

I cannot reproduce this problem, but my best guess is that you need to increase your Java Heap Size. You can find instructions on how to do that here.