Index exceeds the number of array elements.
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Please let me know a solution for the error. Data attached here.
Index exceeds the number of array elements. Index must not exceed 1.
Error in analyzeHFIRdatad0 (line 36)
theta2 = h5read(fname,sprintf('%s/2theta',info.Groups(5).Name));
i=0;
for fna= 2506:2507
fname=sprintf('HB2B_%d.nxs.h5',fna);
i=i+1;
NumPeaks=1;
NumTrials=15;%the higher the number, the better the fit is (but slower), typical value: 10
BaselineMode=1;%0 no baseline, 1 linear, 2 quadratic, 3 flat(not working yet)
peakshape=33;%Ps. Voigt
window=8e-12;% center +/- (window/2) corresponds to the fitting window
center=1.09e-10;
fwhm=1; start=[center fwhm];%first guess (ignore=0)
fixedparameters=[peakshape start(1) start(2)];%specifies fixed peakshape, pos, width (ignore=0)
plots=1;%plot for each peakfit
extra=1;%all peaks with same shape: use extra=1
%% Code starts
info = h5info(fname);
theta2 = h5read(fname,sprintf('%s/2theta',info.Groups(5).Name));
counts = h5read(fname,sprintf('%s/main',info.Groups(5).Name));
wave=h5read(fname,'/instrument/monochromator setting/wave length')*1e-10;
d=wave./(2.*sin(theta2./2*pi/180));
signal=[d,counts];%d-spacing
[results,resultserr]=peakfit(signal,center,window,NumPeaks,peakshape,extra, NumTrials, start, BaselineMode,fixedparameters,plots);
pos(i)=results(1,2); int(i)=results(1,3);
w(i)=results(1,4); area(i)=results(1,5);
err(i)=resultserr(1); r2(i)=resultserr(2);
end
d0=mean(pos)
dlmwrite('d0.csv',d0,'precision',10)
0 Comments
Accepted Answer
Walter Roberson
on 16 Dec 2022
Moved: Walter Roberson
on 16 Dec 2022
I can find 2theta as /entry/DASlogs/2theta but there is no main anywhere in the dataset.
I can find /entry/instrument but there is no monochromator setting anywhere in the dataset.
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