stepwiseglm

Create generalized linear regression model by stepwise regression

Syntax

mdl = stepwiseglm(tbl)

mdl = stepwiseglm(tbl,ResponseVarName)

mdl = stepwiseglm(tbl,y)

mdl = stepwiseglm(X,y)

mdl = stepwiseglm(___,modelspec)

mdl = stepwiseglm(___,modelspec,Name,Value)

Description

mdl = stepwiseglm(tbl) creates a generalized linear regression model for the variables in the table tbl using stepwise regression to add or remove predictors, starting from a constant model. stepwiseglm uses the last variable of tbl as the response variable. stepwiseglm uses forward and backward stepwise regression to determine a final model. At each step, the function searches for terms to add the to model or remove from the model, based on the value of the 'Criterion' argument.

mdl = stepwiseglm(tbl,ResponseVarName) specifies which table variable contains the response data.

mdl = stepwiseglm(tbl,y) uses the variables in tbl for the predictors and y for the response.

mdl = stepwiseglm(X,y) creates a generalized linear regression model of the responses y to a data matrix X.

mdl = stepwiseglm(___,modelspec) specifies the starting model modelspec using any of the input argument combinations in previous syntaxes.

mdl = stepwiseglm(___,modelspec,Name,Value) specifies additional options using one or more name-value pair arguments. For example, you can specify the categorical variables, the smallest or largest set of terms to use in the model, the maximum number of steps to take, or the criterion that stepwiseglm uses to add or remove terms.

Examples

Generalized Linear Model Using Stepwise Algorithm

Create response data using just three of 20 predictors, and create a generalized linear model using stepwise algorithm to see if it uses just the correct predictors.

Create data with 20 predictors, and Poisson response using just three of the predictors, plus a constant.

rng('default') % for reproducibility
X = randn(100,20);
mu = exp(X(:,[5 10 15])*[.4;.2;.3] + 1);
y = poissrnd(mu);

Fit a generalized linear model using the Poisson distribution.

mdl =  stepwiseglm(X,y,...
    'constant','upper','linear','Distribution','poisson')

1. Adding x5, Deviance = 134.439, Chi2Stat = 52.24814, PValue = 4.891229e-13
2. Adding x15, Deviance = 106.285, Chi2Stat = 28.15393, PValue = 1.1204e-07
3. Adding x10, Deviance = 95.0207, Chi2Stat = 11.2644, PValue = 0.000790094

mdl = 
Generalized linear regression model:
    log(y) ~ 1 + x5 + x10 + x15
    Distribution = Poisson

Estimated Coefficients:
                   Estimate       SE       tStat       pValue  
                   ________    ________    ______    __________

    (Intercept)     1.0115     0.064275    15.737    8.4217e-56
    x5             0.39508     0.066665    5.9263    3.0977e-09
    x10            0.18863      0.05534    3.4085     0.0006532
    x15            0.29295     0.053269    5.4995    3.8089e-08


100 observations, 96 error degrees of freedom
Dispersion: 1
Chi^2-statistic vs. constant model: 91.7, p-value = 9.61e-20

The starting model is the constant model. stepwiseglm by default uses deviance of the model as the criterion. It first adds x5 into the model, as the $$p$$-value for the test statistic, deviance (the differences in the deviances of the two models), is less than the default threshold value 0.05. Then, it adds x15 because given x5 is in the model, when x15 is added, the $$p$$-value for chi-square test is smaller than 0.05. It then adds x10 because given x5 and x15 are in the model, when x10 is added, the $$p$$-value for the chi-square test statistic is again less than 0.05.

Input Arguments

tbl — Input data

table

Input data including predictor and response variables, specified as a table. The predictor variables can be numeric, logical, categorical, character, or string. If Distribution is "binomial", the response variable can be numeric, logical, character, or string. Otherwise, the response variable must be numeric.

• By default, stepwiseglm takes the last variable as the response variable and the others as the predictor variables.

• To set a different column as the response variable, use the ResponseVar name-value pair argument.

• To use a subset of the columns as predictors, use the PredictorVars name-value pair argument.

• To define a model specification, set the modelspec argument using a formula or terms matrix. The formula or terms matrix specifies which columns to use as the predictor or response variables.

The variable names in a table do not have to be valid MATLAB^® identifiers, but the names must not contain leading or trailing blanks. If the names are not valid, you cannot use a formula when you fit or adjust a model; for example:

• You cannot specify modelspec using a formula.

• You cannot use a formula to specify the terms to add or remove when you use the addTerms function or the removeTerms function, respectively.

• You cannot use a formula to specify the lower and upper bounds of the model when you use the step or stepwiseglm function with the name-value pair arguments 'Lower' and 'Upper', respectively.

You can verify the variable names in tbl by using the isvarname function. If the variable names are not valid, then you can convert them by using the matlab.lang.makeValidName function.

ResponseVarName — Name of variable to use as response

string scalar | character vector

Name of the variable to use as the response, specified as a string scalar or character vector. ResponseVarName indicates which variable in tbl contains the response data. When you specify ResponseVarName, you must also specify the tbl input argument.

Data Types: char | string

X — Predictor variables

matrix

Predictor variables, specified as an n-by-p matrix, where n is the number of observations and p is the number of predictor variables. Each column of X represents one variable, and each row represents one observation.

By default, the model includes a constant term unless you explicitly remove it, so do not include a column of 1s in X.

Data Types: single | double

y — Response variable

vector | matrix

Response variable, specified as a vector or matrix.

• If 'Distribution' is not 'binomial', then y must be an n-by-1 vector, where n is the number of observations. Each entry in y is the response for the corresponding row of X or tbl. The data type must be single or double.

• If 'Distribution' is 'binomial', then y can be an n-by-1 vector or n-by-2 matrix with counts in column 1 and BinomialSize in column 2.

Data Types: single | double | logical | categorical

modelspec — Starting model

'constant' (default) | character vector or string scalar naming the model | t-by-(p + 1) terms matrix | character vector or string scalar formula in the form 'y ~ terms'

Starting model for stepwiseglm, specified as one of the following:

• A character vector or string scalar containing the model name.

  Value	Model Description
  "constant"	Model contains only a constant (intercept) term
  "linear"	Model contains an intercept and linear term for each predictor
  "interactions"	Model contains an intercept, linear term for each predictor, and all products of pairs of distinct predictors (no squared terms)
  "purequadratic"	Model contains an intercept term and linear and squared terms for each predictor
  "quadratic"	Model contains an intercept term, linear and squared terms for each predictor, and all products of pairs of distinct predictors
  "polyijk"	Model is a polynomial with all terms up to degree i in the first predictor, degree j in the second predictor, and so on. Specify the maximum degree for each predictor by using numerals 0 through 9. The model contains interaction terms, but the degree of each interaction term does not exceed the maximum value of the specified degrees. For example, "poly13" has an intercept and x1, x2, x22, x23, x1*x2, and x1*x22 terms, where x1 and x2 are the first and second predictors, respectively.

• A t-by-(p + 1) terms matrix that specifies the terms in the model, where t is the number of terms, p is the number of predictor variables, and +1 accounts for the response variable. A terms matrix is convenient when the number of predictors is large and you want to generate the terms programmatically. For more information, see Terms Matrix.

• A character vector or string scalar formula in the form

  "y ~ terms",

  where the terms are in Wilkinson Notation. The variable names in the formula must be variable names in tbl or variable names specified by VarNames. Also, the variable names must be valid MATLAB identifiers.

  The software determines the order of terms in a fitted model by using the order of terms in tbl or X. Therefore, the order of terms in the model can be different from the order of terms in the specified formula. For more information, see Formula.

If you want to specify the smallest or largest set of terms in the model that stepwiselm fits, use the Lower and Upper name-value pair arguments.

When you specify modelspec, you cannot use the PredictorVars name-value argument to specify the predictor variables.

Data Types: char | string | single | double

Name-Value Arguments

Specify optional pairs of arguments as Name1=Value1,...,NameN=ValueN, where Name is the argument name and Value is the corresponding value. Name-value arguments must appear after other arguments, but the order of the pairs does not matter.

Before R2021a, use commas to separate each name and value, and enclose Name in quotes.

Example: 'Criterion','aic','Distribution','poisson','Upper','interactions' specifies Akaike Information Criterion as the criterion to add or remove variables to the model, Poisson distribution as the distribution of the response variable, and a model with all possible interactions as the largest model to consider as the fit.

BinomialSize — Number of trials for binomial distribution

1 (default) | numeric scalar | numeric vector | character vector | string scalar

Number of trials for binomial distribution, that is the sample size, specified as the comma-separated pair consisting of 'BinomialSize' and the variable name in tbl, a numeric scalar, or a numeric vector of the same length as the response. This is the parameter n for the fitted binomial distribution. BinomialSize applies only when the Distribution parameter is 'binomial'.

If BinomialSize is a scalar value, that means all observations have the same number of trials.

As an alternative to BinomialSize, you can specify the response as a two-column matrix with counts in column 1 and BinomialSize in column 2.

Data Types: single | double | char | string

CategoricalVars — Categorical predictor list

string array | cell array of character vectors | logical or numeric index vector

Categorical predictor list, specified as a string array or cell array of character vectors containing categorical predictor names in the table tbl, or a logical or numeric index vector indicating which predictor columns are categorical.

• If the predictor data is in a table tbl, then, by default, stepwiseglm treats all categorical values, logical values, character arrays, string arrays, and cell arrays of character vectors as categorical predictors.

• If data is in a matrix X, then the default value of CategoricalVars is an empty matrix []. That is, no predictor is categorical unless you specify it as categorical.

For example, you can specify the second and third variables out of six as categorical using either of the following:

Example: 'CategoricalVars',[2,3]

Example: 'CategoricalVars',logical([0 1 1 0 0 0])

Data Types: single | double | logical | string | cell

Criterion — Criterion to add or remove terms

'Deviance' (default) | 'sse' | 'aic' | 'bic' | 'rsquared' | 'adjrsquared'

Criterion to add or remove terms, specified as the comma-separated pair consisting of 'Criterion' and one of these values:

• 'Deviance' — p-value for an F-test or chi-square test of the change in the deviance that results from adding or removing the term. The F-test tests a single model, and the chi-square test compares two different models.

• 'sse' — p-value for an F-test of the change in the sum of squared error that results from adding or removing the term.

• 'aic' — Change in the value of the Akaike information criterion (AIC).

• 'bic' — Change in the value of the Bayesian information criterion (BIC).

• 'rsquared' — Increase in the value of R².

• 'adjrsquared' — Increase in the value of adjusted R².

Example: 'Criterion','bic'

DispersionFlag — Indicator to compute dispersion parameter

false for 'binomial' and 'poisson' distributions (default) | true

Indicator to compute dispersion parameter for 'binomial' and 'poisson' distributions, specified as the comma-separated pair consisting of 'DispersionFlag' and one of the following.

true	Estimate a dispersion parameter when computing standard errors. The estimated dispersion parameter value is the sum of squared Pearson residuals divided by the degrees of freedom for error (DFE).
false	Default. Use the theoretical value of 1 when computing standard errors.

The fitting function always estimates the dispersion for other distributions.

Example: 'DispersionFlag',true

Distribution — Distribution of the response variable

'normal' (default) | 'binomial' | 'poisson' | 'gamma' | 'inverse gaussian'

Distribution of the response variable, specified as the comma-separated pair consisting of 'Distribution' and one of the following.

'normal'	Normal distribution
'binomial'	Binomial distribution
'poisson'	Poisson distribution
'gamma'	Gamma distribution
'inverse gaussian'	Inverse Gaussian distribution

Example: 'Distribution','gamma'

Exclude — Observations to exclude

logical or numeric index vector

Observations to exclude from the fit, specified as a logical or numeric index vector indicating which observations to exclude from the fit.

For example, you can exclude observations 2 and 3 out of 6 using either of the following examples.

Example: Exclude=[2,3]

Example: Exclude=logical([0 1 1 0 0 0])

Data Types: single | double | logical

Intercept — Indicator for constant term

true (default) | false

Indicator for the constant term (intercept) in the initial fit, specified as the comma-separated pair consisting of 'Intercept' and either true to include the constant term in the initial model or false to remove the constant term from the initial model.

Use 'Intercept' only when specifying the model using a character vector or string scalar, not a formula or matrix.

Example: 'Intercept',false

LikelihoodPenalty — Penalty for likelihood estimate

"none" (default) | "jeffreys-prior"

Penalty for the likelihood estimate, specified as "none" or "jeffreys-prior".

• "none" — stepwiseglm does not apply a penalty to the likelihood estimate.

• "jeffreys-prior" — stepwiseglm uses Jeffreys prior to penalize the likelihood estimate.

For logistic models, setting LikelihoodPenalty to "jeffreys-prior" is called Firth's regression. To reduce the coefficient estimate bias when you have a small number of samples, or when you are performing binomial (logistic) regression on a separable data set, set LikelihoodPenalty to "jeffreys-prior".

Example: LikelihoodPenalty="jeffreys-prior"

Data Types: char | string

Link — Link function

canonical link function (default) | scalar value | structure

Link function to use in place of the canonical link function, specified as the comma-separated pair consisting of 'Link' and one of the following.

Link Function Name	Link Function	Mean (Inverse) Function
'identity'	f(μ) = μ	μ = Xb
'log'	f(μ) = log(μ)	μ = exp(Xb)
'logit'	f(μ) = log(μ/(1–μ))	μ = exp(Xb) / (1 + exp(Xb))
'probit'	f(μ) = Φ–1(μ), where Φ is the cumulative distribution function of the standard normal distribution.	μ = Φ(Xb)
'comploglog'	f(μ) = log(–log(1 – μ))	μ = 1 – exp(–exp(Xb))
'reciprocal'	f(μ) = 1/μ	μ = 1/(Xb)
p (a number)	f(μ) = μp	μ = Xb1/p
S (a structure) with three fields. Each field holds a function handle that accepts a vector of inputs and returns a vector of the same size: S.Link — The link function S.Inverse — The inverse link function S.Derivative — The derivative of the link function	f(μ) = S.Link(μ)	μ = S.Inverse(Xb)

The link function defines the relationship f(μ) = X*b between the mean response μ and the linear combination of predictors X*b.

For more information on the canonical link functions, see Canonical Function.

Example: 'Link','probit'

Data Types: char | string | single | double | struct

Lower — Model specification describing terms that cannot be removed from model

'constant' (default) | character vector | string scalar | terms matrix

Model specification describing terms that cannot be removed from the model, specified as the comma-separated pair consisting of 'Lower' and one of the options for modelspec naming the model.

Example: 'Lower','linear'

NSteps — Maximum number of steps to take

no limit (default) | positive integer

Maximum number of steps to take, specified as the comma-separated pair consisting of 'NSteps' and a positive integer.

Example: 'NSteps',5

Data Types: single | double

Offset — Offset variable

[ ] (default) | numeric vector | character vector | string scalar

Offset variable in the fit, specified as the comma-separated pair consisting of 'Offset' and the variable name in tbl or a numeric vector with the same length as the response.

stepwiseglm uses Offset as an additional predictor with a coefficient value fixed at 1. In other words, the formula for fitting is

f(μ) = Offset + X*b,

where f is the link function, μ is the mean response, and X*b is the linear combination of predictors X. The Offset predictor has coefficient 1.

For example, consider a Poisson regression model. Suppose the number of counts is known for theoretical reasons to be proportional to a predictor A. By using the log link function and by specifying log(A) as an offset, you can force the model to satisfy this theoretical constraint.

Data Types: single | double | char | string

PEnter — Threshold for criterion to add term

scalar value

Threshold for the criterion to add a term, specified as a scalar value described in this table.

Criterion	Default Value	Decision
'Deviance'	0.05	If the p-value of the F-statistic or chi-square statistic is less than PEnter (p-value to enter), add the term to the model.
'SSE'	0.05	If the p-value of the F-statistic is less than PEnter, add the term to the model.
'AIC'	0	If the change in the AIC of the model is less than PEnter, add the term to the model.
'BIC'	0	If the change in the BIC of the model is less than PEnter, add the term to the model.
'Rsquared'	0.1	If the increase in the R-squared value of the model is greater than PEnter, add the term to the model.
'AdjRsquared'	0	If the increase in the adjusted R-squared value of the model is greater than PEnter, add the term to the model.

To prevent forward stepwise regression, specify PEnter as a value that stepwiseglm cannot achieve.

• When Criterion is "Deviance", "SSE", "AIC", or "BIC", specify PEnter as –Inf.

• When Criterion is "Rsquared" or "AdjRsquared", specify PEnter as Inf.

Example: PEnter=0.075

PredictorVars — Predictor variables

string array | cell array of character vectors | logical or numeric index vector

Predictor variables to use in the fit, specified as a string array or cell array of character vectors of the variable names in the table tbl, or a logical or numeric index vector indicating which columns are predictor variables.

The string values or character vectors should be among the names in tbl, or the names you specify using the VarNames name-value pair argument.

The default is all variables in X, or all variables in tbl except for ResponseVar.

For example, you can specify the second and third variables as the predictor variables using either of the following examples.

When you specify PredictorVars, you cannot use the modelspec input argument to specify a terms matrix.

Example: PredictorVars=[2,3]

Example: PredictorVars=logical([0 1 1 0 0 0])

Data Types: single | double | logical | string | cell

PRemove — Threshold for criterion to remove term

scalar value

Threshold for the criterion to remove a term, specified as a scalar value, described in this table.

Criterion	Default Value	Decision
'Deviance'	0.10	If the p-value of the F-statistic or chi-square statistic is greater than PRemove (p-value to remove), remove the term from the model.
'SSE'	0.10	If the p-value of the F-statistic is greater than PRemove, remove the term from the model.
'AIC'	0.01	If the change in the AIC of the model is greater than PRemove, remove the term from the model.
'BIC'	0.01	If the change in the BIC of the model is greater than PRemove, remove the term from the model.
'Rsquared'	0.05	If the increase in the R-squared value of the model is less than PRemove, remove the term from the model.
'AdjRsquared'	-0.05	If the increase in the adjusted R-squared value of the model is less than PRemove, remove the term from the model.

At each step, the stepwiseglm function also checks whether a term is redundant (linearly dependent) with other terms in the current model. When a term is linearly dependent on other terms in the current model, the stepwiseglm function removes the redundant term, regardless of the criterion value. For more information, see Criterion.

To prevent backward stepwise regression, specify PRemove as a value that stepwiseglm cannot achieve.

• When Criterion is "Deviance", "SSE", "AIC", or "BIC", specify PRemove as Inf.

• When Criterion is "Rsquared" or "AdjRsquared", specify PRemove as –Inf.

Example: PRemove=0.05

ResponseVar — Response variable

last column in tbl (default) | character vector or string scalar containing variable name | logical or numeric index vector

Response variable to use in the fit, specified as a character vector or string scalar containing the variable name in the table tbl, or a logical or numeric index vector indicating which column is the response variable. You typically need to use ResponseVar when fitting a table tbl.

For example, you can specify the fourth variable, say yield, as the response out of six variables, in one of the following ways.

Example: ResponseVar="yield"

Example: ResponseVar=[4]

Example: ResponseVar=logical([0 0 0 1 0 0])

Data Types: single | double | logical | char | string

Upper — Model specification describing largest set of terms in fit

'interactions' (default) | character vector | string scalar | terms matrix

Model specification describing the largest set of terms in the fit, specified as the comma-separated pair consisting of 'Upper' and one of the options for modelspec naming the model.

Example: 'Upper','quadratic'

VarNames — Names of variables

{'x1','x2',...,'xn','y'} (default) | string array | cell array of character vectors

Names of variables, specified as the comma-separated pair consisting of 'VarNames' and a string array or cell array of character vectors including the names for the columns of X first, and the name for the response variable y last.

'VarNames' is not applicable to variables in a table or dataset array, because those variables already have names.

The variable names do not have to be valid MATLAB identifiers, but the names must not contain leading or trailing blanks. If the names are not valid, you cannot use a formula when you fit or adjust a model; for example:

• You cannot use a formula to specify the terms to add or remove when you use the addTerms function or the removeTerms function, respectively.

• You cannot use a formula to specify the lower and upper bounds of the model when you use the step or stepwiseglm function with the name-value pair arguments 'Lower' and 'Upper', respectively.

Before specifying 'VarNames',varNames, you can verify the variable names in varNames by using the isvarname function. If the variable names are not valid, then you can convert them by using the matlab.lang.makeValidName function.

Example: 'VarNames',{'Horsepower','Acceleration','Model_Year','MPG'}

Data Types: string | cell

Verbose — Control for display of information

1 (default) | 0 | 2

Control for the display of information, specified as the comma-separated pair consisting of 'Verbose' and one of these values:

• 0 — Suppress all display.

• 1 — Display the action taken at each step.

• 2 — Display the evaluation process and the action taken at each step.

Example: 'Verbose',2

Weights — Observation weights

ones(n,1) (default) | n-by-1 vector of nonnegative scalar values

Observation weights, specified as an n-by-1 vector of nonnegative scalar values, where n is the number of observations.

Data Types: single | double

Output Arguments

mdl — Generalized linear regression model

GeneralizedLinearModel object

Generalized linear regression model, specified as a GeneralizedLinearModel object created using fitglm or stepwiseglm.

More About

Terms Matrix

A terms matrix T is a t-by-(p + 1) matrix that specifies the terms in a model, where t is the number of terms, p is the number of predictor variables, and +1 accounts for the response variable. The value of T(i,j) is the exponent of variable j in term i.

For example, suppose that an input includes three predictor variables, x1, x2, and x3, and the response variable y in the order x1, x2, x3, and y. Each row of T represents one term:

• [0 0 0 0] — Constant term (intercept)

• [0 1 0 0] — x2; equivalently, x1^0 * x2^1 * x3^0

• [1 0 1 0] — x1*x3

• [2 0 0 0] — x1^2

• [0 1 2 0] — x2*(x3^2)

The 0 at the end of each term represents the response variable. In general, a column vector of zeros in a terms matrix represents the position of the response variable. If the predictor and response variables are in a matrix and column vector, respectively, then you must include 0 for the response variable in the last column of each row.

Formula

A formula for model specification is a character vector or string scalar of the form 'y ~ terms'.

• y is the response name.

• terms represents the predictor terms in a model using Wilkinson notation.

To represent predictor and response variables, use the variable names of the input argument tbl or the variable names specified by using the VarNames name-value argument.

For example, if VarNames is ["x1","x2",...,"xn","y"].:

• "y ~ x1 + x2 + x3" specifies a three-variable linear model with an intercept.

• "y ~ x1 + x2 + x3 – 1" specifies a three-variable linear model without an intercept. Note that formulas include a constant (intercept) term by default. To exclude a constant term from the model, you must include –1 in the formula.

Wilkinson Notation

Wilkinson notation describes the terms in a model. The notation relates to the terms included in the model, not to the multipliers (coefficients) of those terms.

Wilkinson notation uses these symbols:

• + means include the next variable.

• – means do not include the next variable.

• : defines an interaction, which is a product of the terms.

• * defines an interaction and all lower order terms.

• ^ raises the predictor to a power, exactly as in * repeated, so ^ includes lower order terms as well.

• () groups the terms.

This table shows typical examples of Wilkinson notation.

Wilkinson Notation	Terms in Standard Notation
1	Constant (intercept) term
x1^k, where k is a positive integer	x1, x12, ..., x1k
x1 + x2	x1, x2
x1*x2	x1, x2, x1*x2
x1:x2	x1*x2 only
–x2	Do not include x2
x1*x2 + x3	x1, x2, x3, x1*x2
x1 + x2 + x3 + x1:x2	x1, x2, x3, x1*x2
x1*x2*x3 – x1:x2:x3	x1, x2, x3, x1*x2, x1*x3, x2*x3
x1*(x2 + x3)	x1, x2, x3, x1*x2, x1*x3

For more details, see Wilkinson Notation.

Canonical Function

The default link function for a generalized linear model is the canonical link function.

Distribution	Canonical Link Function Name	Link Function	Mean (Inverse) Function
'normal'	'identity'	f(μ) = μ	μ = Xb
'binomial'	'logit'	f(μ) = log(μ/(1 – μ))	μ = exp(Xb) / (1 + exp(Xb))
'poisson'	'log'	f(μ) = log(μ)	μ = exp(Xb)
'gamma'	-1	f(μ) = 1/μ	μ = 1/(Xb)
'inverse gaussian'	-2	f(μ) = 1/μ2	μ = (Xb)–1/2

Tips

• The generalized linear model mdl is a standard linear model unless you specify otherwise with the Distribution name-value pair.

• For other methods such as devianceTest, or properties of the GeneralizedLinearModel object, see GeneralizedLinearModel.

• After training a model, you can generate C/C++ code that predicts responses for new data. Generating C/C++ code requires MATLAB Coder™. For details, see Introduction to Code Generation.

Algorithms

• Stepwise regression is a systematic method for adding and removing terms from a linear or generalized linear model based on their statistical significance in explaining the response variable. The method begins with an initial model, specified using modelspec, and then compares the explanatory power of incrementally larger and smaller models.

  The stepwiseglm function uses forward and backward stepwise regression to determine a final model. At each step, the function searches for terms to add to the model or remove from the model based on the value of the 'Criterion' name-value pair argument.

  The default value of 'Criterion' for a linear regression model is 'sse'. In this case, stepwiselm and step of LinearModel use the p-value of an F-statistic to test models with and without a potential term at each step. If a term is not currently in the model, the null hypothesis is that the term would have a zero coefficient if added to the model. If there is sufficient evidence to reject the null hypothesis, the function adds the term to the model. Conversely, if a term is currently in the model, the null hypothesis is that the term has a zero coefficient. If there is insufficient evidence to reject the null hypothesis, the function removes the term from the model.

  Stepwise regression takes these steps when 'Criterion' is 'sse':

  1. Fit the initial model.

  2. Examine a set of available terms not in the model. If any of the terms have p-values less than an entrance tolerance (that is, if it is unlikely a term would have a zero coefficient if added to the model), add the term with the smallest p-value and repeat this step; otherwise, go to step 3.

  3. If any of the available terms in the model have p-values greater than an exit tolerance (that is, the hypothesis of a zero coefficient cannot be rejected), remove the term with the largest p-value and return to step 2; otherwise, end the process.

  At any stage, the function will not add a higher-order term if the model does not also include all lower-order terms that are subsets of the higher-order term. For example, the function will not try to add the term X1:X2^2 unless both X1 and X2^2 are already in the model. Similarly, the function will not remove lower-order terms that are subsets of higher-order terms that remain in the model. For example, the function will not try to remove X1 or X2^2 if X1:X2^2 remains in the model.

  The default value of 'Criterion' for a generalized linear model is 'Deviance'. stepwiseglm and step of GeneralizedLinearModel follow a similar procedure for adding or removing terms.

  You can specify other criteria by using the 'Criterion' name-value pair argument. For example, you can specify the change in the value of the Akaike information criterion, Bayesian information criterion, R-squared, or adjusted R-squared as the criterion to add or remove terms.

  Depending on the terms included in the initial model, and the order in which the function adds and removes terms, the function might build different models from the same set of potential terms. The function terminates when no single step improves the model. However, a different initial model or a different sequence of steps does not guarantee a better fit. In this sense, stepwise models are locally optimal, but might not be globally optimal.

• stepwiseglm treats a categorical predictor as follows:

  • A model with a categorical predictor that has L levels (categories) includes L – 1 indicator variables. The model uses the first category as a reference level, so it does not include the indicator variable for the reference level. If the data type of the categorical predictor is categorical, then you can check the order of categories by using categories and reorder the categories by using reordercats to customize the reference level. For more details about creating indicator variables, see Automatic Creation of Dummy Variables.

  • stepwiseglm treats the group of L – 1 indicator variables as a single variable. If you want to treat the indicator variables as distinct predictor variables, create indicator variables manually by using dummyvar. Then use the indicator variables, except the one corresponding to the reference level of the categorical variable, when you fit a model. For the categorical predictor X, if you specify all columns of dummyvar(X) and an intercept term as predictors, then the design matrix becomes rank deficient.

  • Interaction terms between a continuous predictor and a categorical predictor with L levels consist of the element-wise product of the L – 1 indicator variables with the continuous predictor.

  • Interaction terms between two categorical predictors with L and M levels consist of the (L – 1)*(M – 1) indicator variables to include all possible combinations of the two categorical predictor levels.

  • You cannot specify higher-order terms for a categorical predictor because the square of an indicator is equal to itself.

  Therefore, if stepwiseglm adds or removes a categorical predictor, the function actually adds or removes the group of indicator variables in one step. Similarly, if stepwiseglm adds or removes an interaction term with a categorical predictor, the function actually adds or removes the group of interaction terms including the categorical predictor.

• stepwiseglm considers NaN, '' (empty character vector), "" (empty string), <missing>, and <undefined> values in tbl, X, and Y to be missing values. stepwiseglm does not use observations with missing values in the fit. The ObservationInfo property of a fitted model indicates whether or not stepwiseglm uses each observation in the fit.

Alternatives

• Use fitglm to create a model with a fixed specification. Use step, addTerms, or removeTerms to adjust a fitted model.

References

[1] Collett, D. Modeling Binary Data. New York: Chapman & Hall, 2002.

[2] Dobson, A. J. An Introduction to Generalized Linear Models. New York: Chapman & Hall, 1990.

[3] McCullagh, P., and J. A. Nelder. Generalized Linear Models. New York: Chapman & Hall, 1990.

Version History

Introduced in R2013b

R2024a: Specify penalized likelihood estimation

stepwiseglm now supports penalized likelihood estimation by Jeffreys prior. You can use Jeffreys prior to reduce the coefficient estimate bias when fitting a generalized linear regression model to a separable data set or small number of samples. To penalize the likelihood estimate, set the LikelihoodPenalty name-value argument to "jeffreys-prior".