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NDI-matlab

Version 1.1.1

by Steve Van Hooser

NDI (Neuroscience Data Interface) is a cross-platform interface standard for reading neuroscience data and storing the results of analyses

authenticate - - Authenticate using secret, environment variables or GUI Form

CHEBI - - NDI Ontology object for the Chemical Entities of Biological Interest ontology.

convertDocumentToDatasetInfo - function to convert NDI document to datasetInfo

matlabdumbjsondb

getDocTypes - Find all unique document types and their counts in an NDI session.

getCCByLicences

tutorial_02_02

MD5 - Calculates the MD5 checksum of a file across different operating systems.

export_dbkatzlab_daq_systems.m

validate - a ndi_document to ensure that the type of its properties

fix_empty_records

session.m

NCIm - - NDI Ontology object for the NCI Metathesaurus (NCIm).

tuning_curve_to_response_type - - get the response type ('mean', 'F1', etc) of a tuning curve document

temp_name

unpublish_dataset - - unpublish a dataset

mfdaq_epoch_channel

angelucci_visstim

tutorial_02_03

loadUserInstanceCatalog - - Load a catalog of user metadata instances

tuningcurve

zip_documents_for_upload

openMINDSobj2ndi_document - - openMinds objects to set of ndi.document objects

set_file_info - - set file info parameters for different modes

makeVoltageOffsets - - Make documents from a table of voltage offset values

zip_for_upload - - Create a zip file for uploading to the NDI cloud

probe2elements - - retrieve the elements derived directly from a probe

upload_files_for_dataset_documents - - Upload a set of files belonging to a set of dataset documents

ProbeData.m

ProgressTracker.m

submit_dataset - - submit a dataset for review

getFileUidsFromDocuments - Extracts all unique file UIDs from a cell array of NDI documents.

binepochprobemap - - Create epochprobemap files for a Gluckman BIN directory

epochrange - - return a range of epochs between a first and last epoch

Dataset Upload

test.m

timestamp

abfepochprobemap - - Create epochprobemap files for a Marder ndi session

epochprobemap_daqsystem_vhlab

ontology - - Base class for NDI ontology objects and lookup operations.

ingest - - actually ingest files from an ndi_document file_info into a database

oridirtuning.m

displayDocViewer

processFileManifest

NDIC - - NDI Ontology object for the local NDIC controlled vocabulary file.

filename2epochid - Finds the epochid associated with a given filename.

matfid.m

mock

subjectInfoTable - - Creates a single-row table with subject information for an NDI session.

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Updated 15 Oct 2025

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NDI-matlab