VolumeCut

Version 6.4 (3.68 MB) by Luca Della Santina
Cut image volumes long arbitrary surfaces
0.0
(0)
160 Downloads
Updated 9 Jul 2025
View License on GitHub
VolumeCut allows you to cut an image volume along surfaces of arbitrary shape.
Surfaces are defined by interpolation of sets of coordinates (X,Y,Z) provided by the user as a Matlab marix [n x 3].
Features of this app include:
+ Support for input image format: 8-bit 3D TIFF
+ Automatic voxel calibration when images are saved with ImageJ / FIJI
+ Custom offset can be defined for each surface
+ Custom smoothness level of interpolated surface
+ 4 different cut modes allowing to provide up to three cutting surfaces
+ Volume visualization using Matlab's 3D volume renderer
+ Save cut image volumes with black voxels in the cut region
+ Save masks used to cut the image stack
+ Mathematical operations on 3D masks: unite, intersect, exclude, subtract, invert, find edges, fill holes, close
+ Display and manipulate digital skeletons created with ImageJ's Simple Neurite Tracer
To download the latest version and for more information, visit: https://lucadellasantina.github.io/VolumeCut/

Cite As

Luca Della Santina (2025). VolumeCut (https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.4), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2021a
Compatible with R2014b and later releases
Platform Compatibility
Windows macOS Linux
Categories
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Version Published Release Notes
6.4

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.4
6.3

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.3
6.2

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/6.2
6.1.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.1
6.0.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v6.0
5.2

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v5.2
5.1.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v5.1
5.0.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v5.0
4.9.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.9
4.8

Support for 2D binary masks
New Batch mode: Keep largest object
4.7.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.7
4.6

New Automation option to intensity histograms within masked volume
App now starts centered within the screen
During batch processing an interruptible progress bar informs of status
4.5

Automated tab allows batch measurements across mask images
4.4.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.4
4.3

Fixed bug causing missing interactivity with 3D plots
4.2.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v4.2
4.0

Digital skeleton management
3.3

"Close" and "Fill Holes" now iterate on each Z plane individually for better results than the old pure 3D functions.
3.2

New mask functionalities: Erode, Dilate, Close, Fill, Skeletonize, Ultimate erode, Median filtering
3.1

Mask info button shows mask statistics and overlap volume
3.0

2.3.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.3
2.2.0.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.2
2.1

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.1
2.0

See release notes for this release on GitHub: https://github.com/lucadellasantina/VolumeCut/releases/tag/v2.0
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.