CaImAn

Version 1.0.0.0 (35 MB) by Eftychios Pnevmatikakis
Complete Matlab pipeline for large scale calcium imaging data analysis
5.0
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1.8K Downloads
Updated 4 Jul 2023
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Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach (CNMF).

Cite As

Eftychios Pnevmatikakis (2026). CaImAn (https://github.com/flatironinstitute/CaImAn-MATLAB), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2015a
Compatible with any release
Platform Compatibility
Windows macOS Linux
Categories
Find more on Neuromicroscopy in Help Center and MATLAB Answers
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Acknowledgements

Inspired: Catrex GUI

3D

@CNMF

Sources2D

deconvolution

deconvolution/MCMC

deconvolution/MCMC/utilities

deconvolution/examples

deconvolution/functions

deconvolution/oasis

endoscope

endoscope/cnmfe_scripts

endoscope/demos

tests

use_cases/2016_CSHL_Imaging

use_cases/2017_CSHL_NeuralDataScience

use_cases/2017_CajalCourse

utilities

utilities/GUI

utilities/memmap

use_cases/2017_CSHL_NeuralDataScience

use_cases/outdated/live scripts

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
1.0.0.0

Added an image
Updated name and link to github repo.

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.