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NeuroMiner
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Cite As
Nikolaos Koutsouleris (2025). NeuroMiner (https://github.com/neurominer-git/NeuroMiner/releases/tag/v1.4.1), GitHub. Retrieved .
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- ComputeMeanSDPerf
- NeuroMinerMCCMain
- Scale
- UpdateCVDatamat
- aggregate_similarity
- allcomb
- compute_analytical_pvals
- cv_ExportModels
- cv_ExportModelsPrep
- genID
- getAlgoStr
- getD
- getModelNumDim
- getNMcolors
- get_featnames_VisModels
- h
- membership
- mli_orthviews
- nk_AdjBrainMask
- nk_ApplyLabelTransform
- nk_ApplyTrainedPreproc
- nk_BuildEnsembleEntropy
- nk_CVGridSelector
- nk_CVpartition
- nk_CalibrateProbabilities
- nk_CatNodes
- nk_CheckComprFile
- nk_CheckContainsImagingData
- nk_CheckFieldStatus
- nk_CheckFileExist
- nk_CheckFixedFeatOrderStackInput
- nk_CheckLoadFile
- nk_CheckMatrixEmptyNonVarNonFinite
- nk_CheckNumCoresAvail
- nk_CheckNumParam
- nk_CheckSPMver
- nk_CheckW2Avail
- nk_CompGridFreq
- nk_CompPlattProbOptimum
- nk_CompareClass
- nk_CompareClassResample
- nk_CompatY
- nk_ComputeCVR
- nk_ComputeEnsembleCasePropagationProbability
- nk_ComputeMnMdPairWiseDiff
- nk_ComputeSVMPmap
- nk_ComputeTransNodePerformance
- nk_ConcatParamstr
- nk_ConcatSubgroupPredictions
- nk_ConvProbabilities
- nk_CopyY2Struct
- nk_CorrectPredTails
- nk_CountUniqueOccurences
- nk_CountUniques
- nk_CreateSubSets
- nk_DataLabel_config
- nk_DealWithNaNCases
- nk_DecideClassMem
- nk_DefineCaseListIntegrity
- nk_DefineCaseNames2
- nk_DefineFiles
- nk_DefineFusionModeParams
- nk_DefineGroups
- nk_DefineLIBSVMfun
- nk_DefineLabels
- nk_DefineMLParamStr
- nk_DefineModeflag
- nk_DetIfDimRefInPREPROC
- nk_DetIfTemplPreproc
- nk_DirSelector
- nk_EqualizeHisto
- nk_ExtrIndVol
- nk_ExtractFeatures
- nk_ExtractID
- nk_ExtractPredictions
- nk_FSreslice
- nk_FigSetup2
- nk_FileSelector
- nk_FormatNicely
- nk_GenClass
- nk_GenConfMatrix
- nk_GenGridAct_batch
- nk_GenPermMatrix
- nk_GenTemplParam
- nk_GenerateNMFilePath
- nk_GetAlgoWeightVec
- nk_GetAnalysisInfo
- nk_GetAnalysisStatus
- nk_GetCV2EnsembleDims
- nk_GetLabelDim
- nk_GetModelParams2
- nk_GetNMStatus
- nk_GetOOCVInfo
- nk_GetParamDescription2
- nk_GetPrimalW
- nk_GetScaleYAxisLabel
- nk_GetTestParam
- nk_GetVariateDescription
- nk_GridSearchEnsembleAdaBoost
- nk_INDEPpartition
- nk_ImagingInit
- nk_InitAnalysisPrep
- nk_InitNMwindowColors
- nk_Initialize
- nk_LOOpartition
- nk_LabelTransform
- nk_LoadLinkedData
- nk_MLOptimizerMeta
- nk_MLOptimizerPrep
- nk_MLOptimizer_ExtractDimMat
- nk_MakeCrossFolds
- nk_MakeDummyVariables
- nk_MakeFolds
- nk_MakeRVMTargetMatrix
- nk_ManageDataContainers
- nk_ManageNanCases
- nk_MatchID
- nk_ModelComplexityParams
- nk_Move2OOCV
- nk_MultiBinBind
- nk_MultiClassAssessConfMatrix
- nk_MultiDecideDAG
- nk_MultiDecideErrorCorrOutCodes
- nk_MultiDecideHierarchOneVsOne
- nk_MultiDecideMaxWins
- nk_MultiDecideMaxWinsNegTiesOpt
- nk_MultiPerfComp
- nk_NMLogFileManager
- nk_OOCV
- nk_OOCVMeta
- nk_OOCVPrep
- nk_OOCVPrep
- nk_OneVsAll
- nk_OneVsOne
- nk_PTfromR
- nk_PerfInitSpatial
- nk_PerfResampleImages
- nk_PermInd
- nk_PermPrep
- nk_PermX
- nk_PredictData
- nk_Prep4CV
- nk_PrepMLParams
- nk_PrepPreprocParams
- nk_PrintLogo
- nk_PrintWs
- nk_Range
- nk_ReadMaskIndVol
- nk_ReadVol2Vec
- nk_RecompPerfCV2subgroups
- nk_RelPath
- nk_RemapData
- nk_RenormalizeScores
- nk_ReorderComponents
- nk_ResizeImg
- nk_ReturnActionParam
- nk_ReturnAtOptPos
- nk_ReturnEvalOperator
- nk_ReturnParam
- nk_ReturnParamChain
- nk_ReturnSubSpaces
- nk_SA
- nk_ScopeCellRetDummyFromTable
- nk_SelectAnalysis
- nk_SelectCovariateIndex
- nk_SelectOOCVdata
- nk_SelectVariateIndex
- nk_SetParamChain
- nk_SetupGlobVarsForLIBSVM
- nk_SetupGlobalVariables
- nk_SwapY_OOCV
- nk_ThreshImages
- nk_ThreshWriteImg
- nk_Threshold
- nk_UpdateRootPaths
- nk_Utilities
- nk_VisModels
- nk_VisModels
- nk_VisModelsC
- nk_VisModelsPrep
- nk_VisModels_ExtraLabels
- nk_VisNonImg
- nk_VisRV
- nk_VisReportGlobalRefStats
- nk_VisSV
- nk_VisSmooth
- nk_VisXComputeLpShares
- nk_VisXHelper
- nk_VisXHelperC
- nk_VisXPermHelper
- nk_VisXPermHelper_gen
- nk_VisXPermY
- nk_VisXRealignComponents.m
- nk_VisXRealignComponentsHelper.m
- nk_VisXWeight
- nk_VisXWeight
- nk_VisXWeightC
- nk_Vol2Vec
- nk_Write2Atlas
- nk_WriteVol
- nk_cellcat
- nk_input
- nk_kurtosis
- nk_mahalanobis
- nk_make
- nk_mapY2Struct
- nk_orthviews
- nk_skewness
- nk_smooth
- nm
- percentile
- project2InputSpace
- ranking
- resample_image
- resize_img_useTemp_imcalc
- rotateticklabel
- scale_matrix
- simulate_sampleSize
- splash
- strsplit
- update_NMstruct
FeatGen
- GetSalModeStr
- GetSalModeStrAlgo
- avrRank
- bootprocrust
- colAUC
- kNNm
- nk_AUCFeatRank
- nk_AdaptiveThreshold2
- nk_BhattacharyaFeatRank
- nk_BootSamp
- nk_CalcSpatConst
- nk_Cluster
- nk_ComputeCondEntropy
- nk_ComputeEntropy
- nk_CorrMat
- nk_DefineThresh
- nk_EstimKforMI
- nk_EstimKforMIPerm
- nk_ExtractClusterData
- nk_FScore
- nk_FScoreFeatRank
- nk_FScoreFeatRankNew
- nk_FeatGenEntropy
- nk_FeatSel_Cluster
- nk_FilterCondEntropy
- nk_FilterInfo
- nk_MI
- nk_MIBag
- nk_MutualInfo
- nk_PLS
- nk_PLSpredict
- nk_Procrustes
- nk_SmoothImage
- nk_SpatConst
- nm_discretize
- preprocessing
- randsample
- rdc
- spear
- suggestBeta
FeatGen/FEAST
FeatGen/FEAST/FSToolbox
FeatGen/FEAST/MIToolbox
FeatGen/FEAST/MIToolbox/demonstration_algorithms
FeatGen/GFlip
FeatGen/IMRelief
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple
- IMRelief_Sigmoid_FastImple_Predict.m
- IMRelief_Sigmoid_FastImple_Predict2.m
- IMRelief_cost
- TestMe
- boldify1
- iDetect
- imreliefmain
- kNearestNeighbors
- nk_ImReliefVisCVGrid
FeatGen/MRMR
FeatGen/NNMF
FeatGen/RGS
FeatGen/RSS
FeatGen/SA
- NextSolution1
- NextSolution2
- NextSolution3
- ObjectiveFunction1
- SA_feature_selection
- SA_feature_selection_1.m
- nk_SimAnneal
FeatGen/SVM
FeatGen/Simba
- nk_SimbaHelperGpu.m
- nk_SimbaLinearSigmoid
- nk_SimbaLinearSigmoid_gpu
- nk_SimbaMain
- nk_simbaHelper
- simbamain
FeatGen/pnmf
JuSpace
- JuSpace_config
- JuSpace_no_GUI_2D_faster
- compute_average_mapY
- cv_apply_JuSpace
- cv_perfJuSpace
- fishers_r_to_z
- get_featnames_JuSpace
- get_images_OSF
- nk_ReturnSubSpaces_JuSpace
- removenan_my
- resize_image_JuSpace
MIToolbox-master/matlab
MIToolbox-master/matlab/demonstration_algorithms
Python
automation
cfiles
config
- cv_Label_config
- cv_ROImeans_config
- cv_customPreproc_config
- cv_fastICA_config
- nk_AskCalibUse_config
- nk_BAYLIN_config
- nk_CVpartition_config
- nk_CheckCalibAvailMenu_config
- nk_CompatParams2.m
- nk_ConstructW_config
- nk_CostFun_config
- nk_DECTRE_config
- nk_DataIO3_SpaceDefImage_config
- nk_DataIO_config
- nk_DefPREPROC_config
- nk_DefineCovars_config
- nk_Devmap_config
- nk_DimRed_main_config
- nk_DiscSym_config
- nk_EnsembleStrategy_config
- nk_EvalFunc_config
- nk_ExtDim_config
- nk_FEAST_config
- nk_FeatSel_StrCfg
- nk_Filter_config
- nk_Fusion_config
- nk_GA_config
- nk_GLMNET_config
- nk_GenCVdataMaster2
- nk_GenCVresultsMaster
- nk_GenDataMaster
- nk_GenPreprocMaster2
- nk_GenVISdataMaster
- nk_GetAnalModalInfo_config
- nk_Gflip_config
- nk_GreedySearch_config
- nk_Grid_config
- nk_GroupNorm_config
- nk_IMRelief_config
- nk_Impute_config
- nk_Kernel_config
- nk_LIBLIN_config
- nk_LIBSVM_config
- nk_LabelImpute_config
- nk_LabelMod_config
- nk_MKLRVM_config
- nk_MLI_config
- nk_MLPERC_config
- nk_MRMR_config
- nk_ModelExportPrep
- nk_ModelExport_config
- nk_Model_config
- nk_Multi_config
- nk_OOCVDataIO_config
- nk_OOCV_config
- nk_PFA_config
- nk_PLS_config
- nk_PSO_config
- nk_PolyKernel_config
- nk_Preproc_config
- nk_Preprocess_StrCfg
- nk_ProbalisticFea_config
- nk_Prune_config
- nk_RFE_config
- nk_RGS_config
- nk_RGS_config
- nk_ROBSVM_config
- nk_Rank_config
- nk_RegulFunc_config
- nk_Remvarcomp_config
- nk_SA_config
- nk_SEQOPT_config
- nk_SVM_config
- nk_SavingOptions_config
- nk_Scale_config
- nk_SetupIMReliefParams_config
- nk_Simba_config
- nk_Simba_config
- nk_SkewCorr_config
- nk_SpatialOP_config
- nk_Spatial_config
- nk_Stacking_config
- nk_Standardize_config
- nk_SubSpaceStrategy_config
- nk_SubgroupOperation_config
- nk_Synth_config
- nk_TFDEEP_config
- nk_TrainClass_config
- nk_Unitnorm_config
- nk_UnivCorrProcs_config
- nk_Vis_config
- nk_WAction_config
- nk_WBLCOX_config
- nk_Wrapper_config
- nk_matLearn_BuildMenu_config
- nk_matLearn_DefAlgoParams_config
- nk_matLearn_FindDefInParam_config
- nk_matLearn_IO_config
- nk_matLearn_config
- nk_matLearn_getopts_config
config/data_import
- CalcGlobals
- CheckGlobals
- CheckImageInfoConsistency
- CheckLabel
- CheckReadyStatus
- CheckTabFile
- DataIO
- DefineLabels
- DeleteAll
- DeleteCovarsInNM
- DeleteModalityInNM
- GenerateMessageEntry
- ReadNifti
- ReadSurf
- ReadTabular
- ReadVectors
- RetrieveImageInfo
- SPMimport
- SetFileFilter
- TransferModality2NM
ensemble
- nk_Ambiguity
- nk_BuildDiversityKernel
- nk_BuildEnsemble
- nk_BuildEnsemble2
- nk_CVMax
- nk_ComputeDiversityScore
- nk_Diversity
- nk_DiversityKappa
- nk_DiversityKappa_masked
- nk_DiversityMax
- nk_Diversity_masked
- nk_EnsPerf
- nk_Entropy
- nk_Lobag
- nk_LobagMulti
- nk_LobagMulti_from_labels
- nk_MultiCVMax
- nk_MultiDiversityMax
- nk_MultiEnsPerf
- nk_RegAmbig
- nk_SignBasedConsistency
- nk_SignBasedConsistencySignificance
- nk_SignBasedConsistencySignificanceTwoSided
- nk_SignBasedConsistencySignificance_SVR
- nk_SignBasedConsistencyTwoSided
- nk_ThrowCoin
- nm_ecoc_views_from_oECOC
extra
- cv_export_bestTS_4quade_selectAnal.m
- cv_extract_performanceMetrics_fromNMstruct
- cv_make_mex_all.m
- nm_compile_recursive
graphs
graphs/graph_kernels/labeled
graphs/graph_kernels/svm
graphs/graph_kernels/unlabeled
graphs/graph_kernels/unlabeled/allgraphlets
graphs/graph_kernels/unlabeled/connectedgraphlets
graphs/graph_kernels/unlabeled/samplinggraphlets
- Permutationmatrix3
- Permutationmatrix4
- Permutationmatrix5
- gestkernel3
- gestkernel4
- gestkernel5
- samplesize
graphs/graph_preproc
- GraphKernel_matrixInput
- MutualInformation
- WLKernel_rowsInput
- WLKernel_setsInput
- WL_with_prior_sparsityThres_Ttest
- WL_with_prior_sparsity_thresholding
- array_to_graph
- array_to_graph2
- cal_mi
- cv_ExtGraphConstr_config
- cv_apply_sparsity_thres
- cv_graphConstruction_config
- cv_graphMetrics_config
- cv_graphSparsity_config
- cv_graph_PerfGraphConstruction
- cv_graph_PerfGraphMetrics
- cv_graph_PerfSparsityThres
- cv_graph_constructionKLS
- cv_graph_constructionREFPLUSP
- featSelectT
- sparseCellArray
graphs/graph_preproc/BCT
graphs/graph_preproc/BCT/2019_03_03_BCT
- adjacency_plot_und
- agreement
- agreement_weighted
- align_matrices
- assortativity_bin
- assortativity_wei
- backbone_wu
- betweenness_bin
- betweenness_wei
- breadth
- breadthdist
- charpath
- clique_communities
- clustering_coef_bd
- clustering_coef_bu
- clustering_coef_wd
- clustering_coef_wu
- clustering_coef_wu_sign
- community_louvain
- consensus_und
- core_periphery_dir
- cycprob
- degrees_dir
- degrees_und
- density_dir
- density_und
- diffusion_efficiency
- distance_bin
- distance_wei
- distance_wei_floyd
- diversity_coef_sign
- edge_betweenness_bin
- edge_betweenness_wei
- edge_nei_overlap_bd
- edge_nei_overlap_bu
- efficiency_bin
- efficiency_wei
- eigenvector_centrality_und
- erange
- evaluate_generative_model
- find_motif34
- findpaths
- findwalks
- flow_coef_bd
- gateway_coef_sign
- generate_fc
- generative_model
- get_components
- grid_communities
- gtom
- jdegree
- kcore_bd
- kcore_bu
- kcoreness_centrality_bd
- kcoreness_centrality_bu
- latmio_dir
- latmio_dir_connected
- latmio_und
- latmio_und_connected
- link_communities
- local_assortativity_wu_sign
- make_motif34lib
- makeevenCIJ
- makefractalCIJ
- makelatticeCIJ
- makerandCIJ_dir
- makerandCIJ_und
- makerandCIJdegreesfixed
- makeringlatticeCIJ
- maketoeplitzCIJ
- matching_ind
- matching_ind_und
- mean_first_passage_time
- mleme_constraint_model
- modularity_dir
- modularity_und
- module_degree_zscore
- motif3funct_bin
- motif3funct_wei
- motif3struct_bin
- motif3struct_wei
- motif4funct_bin
- motif4funct_wei
- motif4struct_bin
- motif4struct_wei
- navigation_wu
- null_model_dir_sign
- null_model_und_sign
- pagerank_centrality
- participation_coef
- participation_coef_sign
- partition_distance
- path_transitivity
- predict_fc
- quasi_idempotence
- randmio_dir
- randmio_dir_connected
- randmio_dir_signed
- randmio_und
- randmio_und_connected
- randmio_und_signed
- randomize_graph_partial_und
- randomizer_bin_und
- reachdist
- rentian_scaling_2d
- rentian_scaling_3d
- reorderMAT
- reorder_matrix
- reorder_mod
- resource_efficiency_bin
- retrieve_shortest_path
- rich_club_bd
- rich_club_bu
- rich_club_wd
- rich_club_wu
- rout_efficiency
- score_wu
- search_information
- strengths_dir
- strengths_und
- strengths_und_sign
- subgraph_centrality
- threshold_absolute
- threshold_proportional
- transitivity_bd
- transitivity_bu
- transitivity_wd
- transitivity_wu
- weight_conversion
- writetoPAJ
graphs/graph_preproc/BCT/2019_03_03_BCT/data_and_demos
graphs/graph_preproc/SmallWorldNess-master
- Computing_And_Testing_S_On_Data_Network.m
- ER_Expected_L_C
- NullModel_L_C
- SanalyticER
- SsampleER
- clustering_coef_bu
- clusttriang
- rand_pair
- random_graph
- reachdist
- small_world_ness
graphs/graph_preproc/kde
graphs/graph_preproc/kldiv
graphs/graph_preproc/mi
- condentropy
- condmutualinfo
- demo_mi.m
- entropy
- jointentropy
- makeosmex.m
- mergemultivariables
- mutualinfo
graphs/graph_preproc/minf
gridsearch
- nk_ComputeEnsembleProbability
- nk_ComputeRegulFunction
- nk_FindGridOpt
- nk_GridOptimumSelector.m
- nk_GridSearchHelper
- nk_MLOptimizer
- nk_MLOptimizer_ParamAnnealer
- nk_MLOptimizer_ParamBayes
- nk_MLOptimizer_ParamCycler
- nk_MLOptimizer_Wrapper
- nk_MLOptimizer_WrapperMulti
- nk_MLOptimizer_main
- nk_ModelNodeSelector
- nk_VisVisitedIdx
gui
- NM_OOCV_Manager
- NM_Results_Viewer
- binarize_regr
- create_visdata_tables
- crossanalyse
- determine_probflag
- display_SubParam
- display_calibcurve
- display_classcomparison_matrix
- display_classplot
- display_classplot_oocv
- display_comparator
- display_contigmat
- display_contigplot
- display_dcacurve
- display_main
- display_modality_component_stats
- display_modelperf
- display_modelperf_bagged
- display_multiclassplot
- display_piecharts
- display_plot_modality_shares
- display_presence_metrics
- display_presence_pct_since_entry
- display_presence_ratio
- display_regrplot
- display_regrplot_oocv_labels_unknown
- display_roc
- display_seqopt_perf
- display_tablegenerator
- display_visual
- display_writetable
- drawMultiIsoContours
- drawTissueIsoContours
- dsxy2figxy
- export_features
- export_performance
- export_scores
- extract_subparam_performance
- get_oocvind
- imagingMLI
- load_GDdims
- load_ModalityDropDown
- load_OOCV
- load_analysis
- load_modal
- load_popupmenu1
- load_selAnalysis
- load_selCVoocv
- load_selCase
- load_selComponents
- load_selLabel
- load_selModelMeasures
- load_selOneVsAll_Info
- load_selPager
- load_selSubParams
- load_selVisMeas2
- load_selVisMeasDropDown
- load_selYAxis
- nk_ItemSelector
- nk_ItemSelectorApp
- nk_ItemSelector_App_exported
- nk_main
- nk_results
- overlay_nifti_atlas_debug
- overlay_nifti_gui
- plotshaded
- polyparci
- print_figure
- printvis_ranked_cross_binary
- sel_onevsone
- set_SubInd
- set_panel_visibility
- set_visibility
- switch_analysis
- tbl2file
gui/export_fig
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines
- ghostscript
- im2gif
- isolate_axes
- pdf2eps
- pdftops
- print2array
- print2eps
- read_write_entire_textfile
- user_string
- using_hg2
gui/export_fig/export_fig-master
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines
- ghostscript
- im2gif
- isolate_axes
- pdf2eps
- pdftops
- print2array
- print2eps
- read_write_entire_textfile
- user_string
- using_hg2
hpc
- nk_GenGridAct_batch
- nk_MLInterpreter_batch
- nk_MLOptimizer_batch
- nk_MLOptimizer_batch
- nk_OOCV_batch
- nk_Preprocess_batch
- nk_VisModels_batch
interpretable
- CARE_barMLI
- barMLI
- barMLI
- barShapley
- get_dimsizes_MLI
- make_default_MLI_struct
- nk_CompVectorFromOSH2X
- nk_ComponentContributions.m
- nk_CreateData4MLInterpreter
- nk_MLInterpreter
- nk_MLInterpreterPrep
- nk_MapModelPredictions
- nk_SparseMaskObserv
- nm_shapley
interpretable/shapley
preproc
- PerfDiscretizeObj
- PerfSymbolizeObj
- RemoveDisparateImpact
- SeqkNN
- SeqkNNv2
- act_impute
- apply_binning
- create_binary_labels
- cv_PerfICA
- cv_TestCustomPreproc
- cv_compute_ROImeans
- cv_icaHarmonize
- cv_perfCustomPreproc
- cv_perfROImeans
- fastICA_testing.m
- larsen
- lp_DownshiftGaussImp
- nk_AddParam
- nk_AdjForCovarsUsingLocalModels
- nk_AdjForCovarsUsingPCA
- nk_AdjustData
- nk_AlignPCAModels
- nk_Check4LabelInteraction
- nk_CreatePreprocTemplate
- nk_ExtractCovs
- nk_GenPreML
- nk_GenPreprocSequence
- nk_MultiCentIntensNorm
- nk_MultiCentIntensNorm2
- nk_Normalize2Mean
- nk_NumberCmdStr
- nk_ParamReplicator
- nk_ParamReplicatorNew
- nk_PerfADASYN
- nk_PerfANOVAObj
- nk_PerfANOVAObjNew
- nk_PerfANOVAObjOld
- nk_PerfAdjForCovarsUsingPCAObj
- nk_PerfCommonFeatExtraction
- nk_PerfCompConnectivity
- nk_PerfDevMapObj
- nk_PerfDiscretizeObj
- nk_PerfElimZeroObj
- nk_PerfExtDimObj
- nk_PerfFeatRankObj
- nk_PerfICA
- nk_PerfImputeLabelObj
- nk_PerfImputeObj
- nk_PerfNormObj
- nk_PerfPLSObj
- nk_PerfPreprocess
- nk_PerfPreprocessMeta
- nk_PerfPreprocessSpatial
- nk_PerfPreprocessSpatialNew
- nk_PerfRedObj
- nk_PerfRemMeanDiffObj
- nk_PerfRemMeanDiffObjOld
- nk_PerfScaleObj
- nk_PerfSkewCorrObj
- nk_PerfSpatFilt
- nk_PerfStandardizeObj
- nk_PerfUnitNormObj
- nk_PerfWActObj
- nk_PerfZeroOut
- nk_PreprocDataForEval
- nk_PreprocessPrep
- nk_Regress
- nk_Scale
- nk_ScaleData
- nk_SmoothMask
- nk_SortComponents
- nk_SpatFilt
- nk_TestPerfCompConnectivity
- nk_UnivCorrProcsObj
- nk_WeightData
- spca
preproc/FastICA_25
- Contents.m
- demosig
- dispsig
- fastica
- fasticag
- fpica
- gui_adv
- gui_advc
- gui_cb
- gui_cg
- gui_help
- gui_l
- gui_lc
- gui_s
- gui_sc
- icaplot
- pcamat
- remmean
- whitenv
preproc/Modular
preproc/NMF_Library
- demo
- demo_face
- nk_NMFbase
- nmflibrary_version
- run_me_first.m
- test_nmf_base.m
- test_nmf_online
- test_seminmf
preproc/NMF_Library/auxiliary
- add_outlier
- add_outlier_new
- calc_mse
- calc_nls_nmf
- calc_psnr
- colsum_L_one
- constructW
- data_normalization
- euc_dist
- eval_clustering_accuracy
- g_lambda
- generate_syntheticdata
- get_nmf_default_options
- load_dataset
- mergeOptions
- nesterov_mnls
- nesterov_mnls_general
- nmf_cost
- normalization
- normalize_H
- normalize_W
- projection_mnls
- projection_precon_mnls
- projfunc
- rowsum_R_one
- set_disp_frequency
- store_nmf_infos
- update_alpha
preproc/NMF_Library/auxiliary/clustering_evaluator
- MutualInfo
- cal_entropy
- calc_nmi
- calc_purity
- calc_purity_f
- count_occurrence
- nmi_nbs
- nmi_onmf
- purity
- purity_f
preproc/NMF_Library/auxiliary/distribution
preproc/NMF_Library/auxiliary/initialization
preproc/NMF_Library/auxiliary/k-means
preproc/NMF_Library/auxiliary/similarity_matrix
preproc/NMF_Library/plotter
preproc/NMF_Library/plotter/plot_dictionary
preproc/NMF_Library/solver/3rd_party/anls
preproc/NMF_Library/solver/3rd_party/gnmf
preproc/NMF_Library/solver/3rd_party/pgd
preproc/NMF_Library/solver/3rd_party/sdnmf
preproc/NMF_Library/solver/base
preproc/NMF_Library/solver/nenmf
preproc/NMF_Library/solver/online
preproc/NMF_Library/solver/orthogonal
preproc/NMF_Library/solver/probabilistic
preproc/NMF_Library/solver/robust
preproc/NMF_Library/solver/semi_nmf
preproc/NMF_Library/solver/sparse
- nmf_sc
- nmf_sparse_mu
- nmf_sparse_mu_v
- ns_nmf
- sparse_nmf
- test_nsnmf.m
- test_sparse_nmf.m
- test_sparse_nmf_org.m
preproc/NMF_Library/solver/symm
preproc/NMF_Library/test
- comp_nmf_base_algorithms
- comp_nmf_online_algorithms
- comp_nmf_online_algorithms_test
- comp_nmf_robust_algorithms
- demo_face_online
- demo_face_with_outlier_online
- test_clustering_gnmf_sdnmf.m
preproc/NMF_Library_v2
preproc/NMF_Library_v2/auxiliary
- NormalizeFea
- add_outlier
- calc_mse
- calc_psnr
- check_divergence
- check_stop_condition
- check_update
- constructW
- display_info
- display_stop_reason
- generate_syntheticdata
- get_nmf_default_options
- load_dataset
- mergeOptions
- nmf_cost
- nmflibrary_message
- nmflibrary_version
- normalize_H
- normalize_W
- normalize_WH
- normalize_data
- normalize_image
- set_disp_frequency
- store_nmf_info
- textwaitbar
preproc/NMF_Library_v2/auxiliary/clustering_algorithm
preproc/NMF_Library_v2/auxiliary/clustering_evaluator
- MutualInfo
- bestMap
- best_map
- cal_entropy
- calc_nmi
- calc_purity
- calc_purity_f
- compute_f
- count_occurrence
- eval_clustering_accuracy
- hungarian
- nmi_nbs
- nmi_onmf
- purity
- purity_f
- store_clustering_accuracy
preproc/NMF_Library_v2/auxiliary/distribution
preproc/NMF_Library_v2/auxiliary/initialization
preproc/NMF_Library_v2/auxiliary/nesterov_tools
preproc/NMF_Library_v2/auxiliary/similarity_matrix
preproc/NMF_Library_v2/plotter
preproc/NMF_Library_v2/plotter/plot_dictionary
preproc/NMF_Library_v2/solver
preproc/NMF_Library_v2/solver/3rd_party/gnmf
preproc/NMF_Library_v2/solver/3rd_party/sdnmf
preproc/NMF_Library_v2/solver/3rd_party/test
preproc/NMF_Library_v2/solver/convex
preproc/NMF_Library_v2/solver/convex/convex_auxiliary
preproc/NMF_Library_v2/solver/convex/test
preproc/NMF_Library_v2/solver/convolutive
preproc/NMF_Library_v2/solver/convolutive/convolutive_auxiliary
preproc/NMF_Library_v2/solver/convolutive/test
preproc/NMF_Library_v2/solver/deep
preproc/NMF_Library_v2/solver/deep/test
preproc/NMF_Library_v2/solver/divergence
preproc/NMF_Library_v2/solver/divergence/test
preproc/NMF_Library_v2/solver/frobenius_norm
preproc/NMF_Library_v2/solver/frobenius_norm/base_auxiliary
preproc/NMF_Library_v2/solver/frobenius_norm/test
preproc/NMF_Library_v2/solver/minvol
preproc/NMF_Library_v2/solver/minvol/minvol_auxiliary
preproc/NMF_Library_v2/solver/minvol/test
preproc/NMF_Library_v2/solver/nesterov
preproc/NMF_Library_v2/solver/nesterov/test
preproc/NMF_Library_v2/solver/nmtf
preproc/NMF_Library_v2/solver/nmtf/test
preproc/NMF_Library_v2/solver/nn_under_approx
preproc/NMF_Library_v2/solver/nn_under_approx/test
preproc/NMF_Library_v2/solver/nnls
- HALSupdt
- nnls1_asgivens
- nnls_fpgm
- nnls_init_nmflibrary
- nnls_orth
- nnls_solver
- nnlsm_activeset
- nnlsm_blockpivot
- normalEqComb
preproc/NMF_Library_v2/solver/online
- acc_online_mu_nmf
- asag_mu_nmf
- incremental_mu_nmf
- online_mu_nmf
- robust_online_mu_nmf
- sagmu_nmf
- smu_nmf
- spg_nmf
- srgmu_nmf
- svrmu_nmf
preproc/NMF_Library_v2/solver/online/online_auxiliary
preproc/NMF_Library_v2/solver/online/test
- comp_nmf_online_algorithms_test
- demo_face_online
- demo_face_with_outlier_online
- demo_nmf_online
- eval_online_nmf
- test_online_nmf
preproc/NMF_Library_v2/solver/ordinal
preproc/NMF_Library_v2/solver/orthogonal
- alternating_onmf
- alternating_onmf_test
- dtpp_nmf
- dtpp_nmf_test
- hals_so_nmf
- hals_so_nmf_test
- orth_mu_nmf
- orth_mu_nmf_test
preproc/NMF_Library_v2/solver/orthogonal/test
preproc/NMF_Library_v2/solver/probabilistic
preproc/NMF_Library_v2/solver/probabilistic/test
preproc/NMF_Library_v2/solver/projective
preproc/NMF_Library_v2/solver/projective/test
preproc/NMF_Library_v2/solver/rank2
preproc/NMF_Library_v2/solver/rank2/test
preproc/NMF_Library_v2/solver/robust
preproc/NMF_Library_v2/solver/robust/test
preproc/NMF_Library_v2/solver/semi
preproc/NMF_Library_v2/solver/semi/semi_auxiliary
preproc/NMF_Library_v2/solver/semi/test
preproc/NMF_Library_v2/solver/separable
preproc/NMF_Library_v2/solver/separable/test
preproc/NMF_Library_v2/solver/sparse
- ns_nmf
- palm_sparse_smooth_nmf
- proj_sparse_nmf
- sc_nmf
- sparse_mu_nmf
- sparse_mu_nmf_test
- sparse_mu_v_nmf
- sparse_nmf
preproc/NMF_Library_v2/solver/sparse/sparse_auxiliary
- fastgradsparseNNLS
- projfunc
- sp
- sp_col
- wcheckcrit
- weightedgroupedsparseproj
- weightedgroupedsparseproj_col
- wgmu
preproc/NMF_Library_v2/solver/sparse/test
- test_nsnmf.m
- test_palm
- test_proj_sparse_nmf.m
- test_proj_sparse_nmf_change_sparse_ratio.m
- test_sparse_nmf
preproc/NMF_Library_v2/solver/symmetric
preproc/NMF_Library_v2/solver/symmetric/test
preproc/NMF_Library_v2/solver/weight_lowrank_aprox
preproc/NMF_Library_v2/solver/weight_lowrank_aprox/test
preproc/NMF_Soteiras
- AUtoPhysicalUnits
- Hungarian
- NNDSVD
- calcRecError.m
- calculateComponentWeightedAverageNIFTI
- clustering_adjustedRand_fast
- evaluateReproducibility
- opnmf
- opnmf_mem
- randpca
preproc/NeNMF
preproc/SparsePLS
preproc/combat
- aprior
- bprior
- combat
- combat_old
- combat_update_newbatch_auto
- example_combat_extval.m
- itSol
- postmean
- postvar
preproc/drrobust
- L1median
- adjustedboxplot
- adjustedoutlyingness
- adm
- agnes
- bagplot
- bannerplot
- cda
- cdq
- chi2inv
- chiqqplot
- clara
- classSVD
- clusplot
- common_size
- cpca
- cpcr
- csimca
- csimpls
- cvMcd
- cvRobpca
- cvRpcr
- cvRsimpls
- daisy
- daplot
- ddplot
- diana
- distplot
- ellipsplot
- extractmcdregres
- fanny
- gamcdf
- gampdf
- greatsort
- halfspacedepth
- hl
- kernelEVD
- lmc
- lsscatter
- ltsregres
- madc
- mahalanobis
- makeplot
- mc
- mcdcov
- mcdregres
- mcenter
- mlochuber
- mloclogist
- mlr
- mona
- mscalelogist
- nm_gamcdf
- nm_gaminv
- norminv
- normqqplot
- ols
- pam
- plotnumbers
- predict
- putlabel
- qn
- qnm
- randomset
- rapca
- rda
- regresdiagplot
- regresdiagplot3d
- removal
- removeObsMcd
- removeObsRobpca
- residualplot
- rmc
- robpca
- robpcaregres
- robstd
- rpcr
- rrmse
- rsimca
- rsimpls
- rsquared
- rstep
- scorediagplot
- screeplot
- silhouetteplot
- simcaplot
- stdnormal_inv
- tree
- twopoints
- unimcd
- uniran
- updatecov
- weightmecov
preproc/drtoolbox
- Contents.m
- compute_mapping
- drgui
- fast_tsne
- generate_data
- intrinsic_dim
- mexall
- out_of_sample
- out_of_sample_est
- prewhiten
- reconstruct_data
- reconstruction_error
- test_toolbox
preproc/drtoolbox/techniques
- L2_distance
- autoencoder_ea
- backprop
- backprop_gradient
- cca
- cfa
- cg_update
- charting
- checkgrad
- combn
- components
- compute_recon_err
- csdp
- d2p
- diffusion_maps
- dijk
- dijkstra
- em_pca
- fa
- fastmvu
- find_nn
- find_nn_adaptive
- gda
- gplvm
- gplvm_grad
- gram
- hill_obj
- hillclimber2c
- hlle
- infermfa
- isomap
- jdqr
- jdqz
- kernel_function
- kernel_pca
- landmark_isomap
- laplacian_eigen
- lda
- llc
- lle
- lle_allcomp
- lltsa
- lmnn
- lmvu
- lpp
- ltsa
- mcml
- mcml_grad
- mds
- mgs
- minimize
- mppca
- mvu_x
- mvu_x_grad
- nca
- nca_lin_grad
- nk_tsne
- npe
- pca
- readsol
- recon_data_from_autoenc
- recon_data_from_autoenc2
- reconstruction_derivative
- roll_out
- run_data_through_autoenc
- run_data_through_network
- run_llc
- sammon
- sdecca2
- sne
- sparse_nn
- spe
- sym_sne
- train_autoencoder
- train_deep_autoenc
- train_grbm
- train_lin_rbm
- train_rbm
- tsne
- tsne_d
- tsne_p
- welcome
- writesdpa
- x2p
preproc/drtools
- EuDist2
- IsoP
- KLPP
- KPCA
- KSR
- KSR_caller
- LGE
- LPP
- LSDA
- LaplacianScore
- MMP
- NPE
- OLGE
- OLPP
- PCA
- SDA
- SDA_MR
- SR
- SR_caller
- TensorLGE
- TensorLPP
- constructKernel
- constructW
- lars
- lsqr2
- nnmf_lin
preproc/mi
- condentropy
- condmutualinfo
- demo_mi.m
- entropy
- jointentropy
- makeosmex.m
- mergemultivariables
- mrmr_mibase_d
- mrmr_mid_d
- mrmr_miq_d
- mutualinfo
preproc/nmfv1_4
- EQP
- EQP0
- FriedmanTest
- JSM
- MAT2DAT
- NMFBicHeatMap
- NMFCluster
- NMFHeatMap
- NNQPActiveSet
- SB
- SW
- biCluster
- bootstrapnnlsClassifier
- changeClassLabels01
- chooseBestk
- classification
- classificationPredict
- classificationTrain
- computeKernelMatrix
- computeMetaSample
- constrainedQPActive
- convexnmfrule
- convexnmfruletest
- cvExperiment
- dispersionCoefficient
- ds2nfu
- dynamicSystems_kernel
- dynamicSystems_kernel2
- dynamic_kernel
- entropyCluster
- estimatePQRS
- exampleBiCluster.m
- exampleBioProcessGS.m
- exampleBioProcessMYC.m
- exampleBioProcessTSYeast.m
- exampleClassification.m
- exampleCluster.m
- exampleClusterWeighted.m
- exampleFeatureExtraction.m
- exampleFeatureExtractionKernel.m
- exampleFeatureSelection.m
- exampleFitLearnCurve.m
- exampleFriedmanTest.m
- fcnnls
- featSel
- featSelNMF
- featureExtractionTrain
- featureExtrationTest
- featureFilterNMF
- genCode
- geometricMean
- getBestScores
- getClusters
- getLabel
- getRank
- getRelationMatrix
- gridSearchUniverse
- innerProduct
- invPowerLaw
- iszero
- kernelLinear
- kernelPoly
- kernelRBF
- kernelSigmoid
- kernelSparseNMFNNQP
- kernelconvexnmf
- kernelnmfdecom
- kernelseminmfnnls
- kernelseminmfrule
- kernelsparseseminmfnnls
- kfcnnls
- kfcnnls2
- knnrule
- kurnnls
- l1NNQPActiveSet
- l1QP
- learnCurve
- leaveMOut
- localSVM
- logisticRegressPredict
- logisticRegressTrain
- lrc
- mat2vec
- matrixNorm
- mergeOption
- mnmf
- modSelKM
- modelSelectionGammaK
- multiClassifiers
- nmf
- nmfClassifier
- nmfnnls
- nmfnnlstest
- nmfrule
- nnlsClassifier
- normalizeKernelMatrix
- normc
- normmean0std1
- num2cellstr
- orthnmfrule
- orthnmfruletest
- perform
- plotBarError
- plotNemenyiTest
- pseudoinverse
- purity
- repetitivenmfClassifier
- searchkernelRange
- seminmfnnls
- seminmfnnlstest
- seminmfrule
- seminmfruletest
- significantAcc
- softSVMPredict2
- softSVMTrain2
- sparseNMFNNQP
- sparsenmf2nnqp
- sparsenmf2rule
- sparsenmfnnls
- sparsenmfnnlstest
- sparseseminmfnnls
- sparsity
- splitTrain2TrainTestSubset
- subspace
- superkernelseminmfnnls
- vec2mat
- vote
- vsmf
- vsmftest
- wnmfrule
- writeGeneList
- wvote
script_usage
simulation
- GaussDist
- cv_SynthGaussianCopula
- cv_estimate_samplesize_config
- cv_estimate_samplesize_simu
- cv_visualize_samlesize_estimation_results
- nk_CreatPredFeat
- nk_DataLabel_config
- nk_SimulateML
- nk_SynthDistkNN
- nk_SynthPCAGauss
- nk_SynthPCAGaussDist.m
- nk_SynthPCAGaussGMM
trainpredict
- ACCURACY
- ADASYN
- ALLPARAM
- AUC
- BAC
- BAC2
- CC
- ComputeEnsPerf
- DOR
- DetrendFoldPerm
- ECE
- EvalCoxPH
- EvalSeqOpt
- EvalSubSpaces
- FPR
- FSCORE
- FoldPerm
- GMEAN
- GetMLType
- KAPPA
- MAERR
- MCC
- MCE
- MSE
- MSEINVDENS
- MultiDichoFoldPerm
- NETBEN
- NNP
- NPV
- NRMSD
- NRSMD
- OptimCore
- PPV
- PSI
- ProbabilisticFea
- RMSD
- SCC
- SENSITIVITY
- SPECIFICITY
- SelectFeaturesAcrossCV1
- SubSpaceStrat
- TPR
- TransferResults
- WrapperPenaltyFunctionPlotter.m
- avrRank
- binProbabilities
- brierScore
- calibrateScores
- cellcat
- checkProperLossCalibration
- determine_linsvm_flag
- fknn
- generateDAG
- getfield_default
- isotonic_regression
- myIsotonicRegression
- nLR
- nearestneighbour
- nk_AdaLIBSVM.m
- nk_AnalyzeMatrix
- nk_ApplyDetrend
- nk_BuildCalibrationModel
- nk_CVPermFold
- nk_CompSitePerf
- nk_ComputeConfMatrix
- nk_ConcatLIBSVMParamStr
- nk_DCA
- nk_DefineCmdStr
- nk_DefineEvalFunc
- nk_DefineTrainPredictFunc
- nk_DetrendPredictions
- nk_DetrendPredictions2
- nk_EnsembleBoostingWeights
- nk_GenMatLearnOptions
- nk_GenRobSVMCmd
- nk_GenVI
- nk_GetGradientWeight
- nk_GetLIBSVMClassType
- nk_GetLIBSVMRegrType
- nk_GetParam2
- nk_GetParam2_BAYLIN
- nk_GetParam2_BLOREG
- nk_GetParam2_CCSSVM
- nk_GetParam2_DECTRE
- nk_GetParam2_ELASVM
- nk_GetParam2_FAMRVR
- nk_GetParam2_GLMFIT
- nk_GetParam2_GLMNET
- nk_GetParam2_GRDBST
- nk_GetParam2_IMRELF
- nk_GetParam2_LIBLIN
- nk_GetParam2_LIBSVM
- nk_GetParam2_LOGREG
- nk_GetParam2_MEXELM
- nk_GetParam2_MKLRVM
- nk_GetParam2_MLPERC
- nk_GetParam2_MVTRVM
- nk_GetParam2_MVTRVR
- nk_GetParam2_MikRVM
- nk_GetParam2_RNDFOR
- nk_GetParam2_ROBSVM
- nk_GetParam2_SEQOPT
- nk_GetParam2_TFDEEP
- nk_GetParam2_WBLCOX
- nk_GetParam2_kNNMEX
- nk_GetParam2_matLRN
- nk_GetPermImportance
- nk_GetTestPerf
- nk_GetTestPerf_BAYLIN
- nk_GetTestPerf_BLOREG
- nk_GetTestPerf_DECTRE
- nk_GetTestPerf_ELASVM
- nk_GetTestPerf_FAMRVR
- nk_GetTestPerf_GLMFIT
- nk_GetTestPerf_GLMNET
- nk_GetTestPerf_GRDBST
- nk_GetTestPerf_IMRELF
- nk_GetTestPerf_LIBLIN
- nk_GetTestPerf_LIBSVM
- nk_GetTestPerf_LOGREG
- nk_GetTestPerf_MEXELM
- nk_GetTestPerf_MKLRVM
- nk_GetTestPerf_MLPERC
- nk_GetTestPerf_MVTRVR
- nk_GetTestPerf_MikRVM
- nk_GetTestPerf_RNDFOR
- nk_GetTestPerf_ROBSVM
- nk_GetTestPerf_SEQOPT
- nk_GetTestPerf_TFDEEP
- nk_GetTestPerf_WBLCOX
- nk_GetTestPerf_kNNMEX
- nk_GetTestPerf_matLRN
- nk_LabelImputer
- nk_MajVote
- nk_MultiAssemblePredictions
- nk_MultiClassAreaRatio
- nk_MultiClassRatio2Random
- nk_MultiDecideMulti
- nk_MultiEvalPerf
- nk_MultiPerfQuant
- nk_OptPredSeq
- nk_OptPredSeq_v2
- nk_PerfCalibrationAnalysis
- nk_PerfDCA
- nk_ROC
- nk_RemNanSamples
- nk_ReturnMLParams
- nk_SetWeightStr
- nk_ShowEnsembleDiversity
- nk_TrainPermFold
- nk_WeigthDataInstanceHisto
- nk_detrend
- nk_plot_adaptive_penalty
- pLR
- partest
- plotCalibrationDeciles
- plotReliabilityDiagram
- rfe_algo_settings
- rfe_algo_settings_adaptive
- rfe_algo_settings_multi
- rfe_build_similarity_knn
- rfe_forward_hierarchical.m
- rfe_multi_perm_featcombs
- rfe_natural_stop_test
- rfe_plot_wrapper_trace
- rfe_redundancy_penalty
- robust_sigma
- robust_sigma
- robust_sigma
- simulate_adaptive_wrapper_selection_process.m
- trigKernel
trainpredict/BBQ
- Mysvmclassify
- Mysvmdecision
- buildBBQ
- elbow
- getAUC
- getECE
- getMCE
- getMeasures
- getRMSE
- predictBBQ
- test.m
trainpredict/GAFeatSel
trainpredict/HYDRA
trainpredict/LIBSVM-Plus-2.89
trainpredict/MALSAR-1.0
trainpredict/MALSAR-1.0/MALSAR/c_files/largescale_ops
- install.m
- sparse_inp.m
- sparse_inp_native
- sparse_update.m
- sparse_update_native
- testMatrixMultiply.m
- testMatrixMultiply2
- test_consist1.m
- test_consist2.m
trainpredict/MALSAR-1.0/MALSAR/functions/CMTL
trainpredict/MALSAR-1.0/MALSAR/functions/Lasso
trainpredict/MALSAR-1.0/MALSAR/functions/SRMTL
trainpredict/MALSAR-1.0/MALSAR/functions/cASO
trainpredict/MALSAR-1.0/MALSAR/functions/calibration
- MTFLC_ADMM
- MTFLC_ADMM_WSolver
- MTFLC_CVX
- MTFLCd_ADMM
- MTFLCd_ADMM_WSolver
- MTFLCd_DFISTA
- MTFLCd_DPG
- MTFLCd_DSolver
- MTFLCd_SFISTA
- MTFLCd_SPG
- MTFLCd_SPGWrapper
- MTFLCd_SSolver
- MTFLCd_Subg
- diagonalize
- primalObj
- primalObjD
- setOptsDefault
- standardize
trainpredict/MALSAR-1.0/MALSAR/functions/dirty
- L11norm
- L1infnorm
- Least_Dirty
- Logistic_Dirty
- _Example.m
- diagonalize
- proximalL11norm
- proximalL1infnorm
trainpredict/MALSAR-1.0/MALSAR/functions/iMSF
trainpredict/MALSAR-1.0/MALSAR/functions/joint_feature_learning
trainpredict/MALSAR-1.0/MALSAR/functions/low_rank
trainpredict/MALSAR-1.0/MALSAR/functions/msmtfl
trainpredict/MALSAR-1.0/MALSAR/functions/mutli-task clustering
trainpredict/MALSAR-1.0/MALSAR/functions/pacifier
trainpredict/MALSAR-1.0/MALSAR/functions/pacifier/private
- merge_struct
- pnopt_Lbfgs_prod
- pnopt_backtrack
- pnopt_curvtrack
- pnopt_flags.m
- pnopt_optimset
- pnopt_quad
- pnopt_sparsa
- pnopt_stop.m
- prox_l1
- prox_nnl1
- prox_null
- tfocs_err
- tfocs_prox
- tfocs_stop
trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/TGL
trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/cFSGL
trainpredict/MALSAR-1.0/MALSAR/functions/progression_model/nFSGL
trainpredict/MALSAR-1.0/MALSAR/functions/rMTFL
trainpredict/MALSAR-1.0/MALSAR/functions/robust
trainpredict/MALSAR-1.0/MALSAR/functions/sparse_low_rank
trainpredict/MALSAR-1.0/MALSAR/utils
trainpredict/MALSAR-1.0/examples
- example_CMTL.m
- example_Calibration.m
- example_Dirty.m
- example_Dirty_Classify.m
- example_L21.m
- example_LSSMTC.m
- example_Lasso.m
- example_Robust.m
- example_SRMTL.m
- example_SRMTL_spcov.m
- example_Trace.m
- example_iMSF.m
- example_msmtfl.m
- example_mtl_classify.m
- example_pacifier.m
- example_rMTFL.m
- example_rMTFL_Classify.m
trainpredict/MALSAR-1.0/examples/train_and_test
- CrossValidation1Param
- CrossValidationDirty
- eval_MTL_accuracy
- eval_MTL_mse
- eval_MTL_rmse
- mtSplitPerc
- test_script.m
trainpredict/MRVR
- demo.m
- fmrvr
- mc_rvm.m
- mcrvm_example
- monteCarloSimulations.m
- mvrvm.m
- mvrvm_example.m
- sbl_kernelFunction
trainpredict/SB2_Release_200
- SB1_KernelFunction
- SB2_ControlSettings
- SB2_DataError
- SB2_Diagnostic
- SB2_FormatTime
- SB2_FullStatistics.m
- SB2_Initialisation.m
- SB2_Likelihoods
- SB2_ParameterSettings
- SB2_PreProcessBasis
- SB2_Sigmoid
- SB2_UserOptions
- SparseBayes.m
- SparseBayesDemo
trainpredict/SB2_Release_200/SB1_Release_110
- SB1_Diagnostic
- SB1_Estimate.m
- SB1_ExampleClassify
- SB1_ExampleRegress
- SB1_KernelFunction
- SB1_PosteriorMode
- SB1_RVM.m
- getEnvironment
- setEnvironment
trainpredict/SVEN
trainpredict/blogreg
trainpredict/elm_linear
trainpredict/glmnet
- coxnet
- cvcompute
- cvcoxnet
- cvelnet
- cvfishnet
- cvglmnet
- cvglmnetCoef
- cvglmnetPlot
- cvglmnetPredict
- cvlognet
- cvmrelnet
- cvmultnet
- elnet
- err
- fishnet
- glmnet
- glmnetCoef
- glmnetControl
- glmnetDev
- glmnetPlot
- glmnetPredict
- glmnetPrint
- glmnetSet
- histcmd
- lognet
- mrelnet
- nonzeroCoef
- wtmean
trainpredict/liblinear-2.44/matlab
trainpredict/liblinear-2.47/matlab
trainpredict/libsvm-mat-2.9-1
trainpredict/libsvm-weights-3.12/matlab
trainpredict/mRVMs
- YTruncate
- build_standarized_kernel
- chol_inv
- col_sum
- cv_mRVM1
- cv_mRVM1_MKL
- cv_mRVM2
- cv_mRVM2_MKL
- kernel_func_RVM
- mRVM_train_output
- postA
- postW_map
- predict_mRVM
- predict_mRVM_MKL
- safenormcdf
- safenormpdf
- standardize_data
- standardize_test_set
- train_mRVM1
- train_mRVM1_MKL
- train_mRVM2
- train_mRVM2_MKL
- updateY
trainpredict/matLearn2016
trainpredict/matLearn2016/binaryclass
- ml_binaryclass_Cauchit
- ml_binaryclass_HSVM
- ml_binaryclass_MLP
- ml_binaryclass_SSVM
- ml_binaryclass_SVM
- ml_binaryclass_bagging
- ml_binaryclass_basis
- ml_binaryclass_boosting
- ml_binaryclass_brokenStump
- ml_binaryclass_elastic_net
- ml_binaryclass_exponential
- ml_binaryclass_extreme
- ml_binaryclass_logistic
- ml_binaryclass_multiclass
- ml_binaryclass_perceptron
- ml_binaryclass_probit
- ml_binaryclass_randomForest
- ml_binaryclass_regression
- ml_binaryclass_stump
- ml_binaryclass_tree
trainpredict/matLearn2016/helpers/kernels
trainpredict/matLearn2016/helpers/loss functions
- SSVMMultiLoss
- ml_MLP_multiple_regression_loss
- ml_factor_analysis_loss
- ml_factor_analysis_loss
- ml_ordinal_logistic_loss
- ml_penalized_L2
- ml_penalized_kernel_L2_matrix
- ml_penalized_kernel_L2_subset
- ml_regression_leastSquares
- ml_softmax_loss
trainpredict/matLearn2016/helpers/misc
trainpredict/matLearn2016/helpers/misc/data manipulation
trainpredict/matLearn2016/helpers/misc/mathematical convenience functions
trainpredict/matLearn2016/helpers/misc/plotting
- getColors
- getColorsRGB
- hline
- linear_makeContourPlot.m
- linear_makeOneContourPlot
- plot2DClassifier
- plot2DClassifier_red
- plot2DLine
- plotClassifier_2
- plotClassifier_2
- plotLine
- plotPDF
- plotRegression1D
- plotRegression2DPoints
- plotSquareImages
- subtightplot
- vline
trainpredict/matLearn2016/helpers/optimization
trainpredict/matLearn2016/helpers/optimization/L1General
trainpredict/matLearn2016/helpers/optimization/L1General/KPM
trainpredict/matLearn2016/helpers/optimization/L1General/L1General2
- L1General2_AS
- L1General2_AS
- L1General2_AS
- L1General2_AS
- L1General2_AS
- L1General2_DSST
- L1General2_OWL
- L1General2_OWL
- L1General2_OWL
- L1General2_PSSgb
- L1General2_SpaRSA
trainpredict/matLearn2016/helpers/optimization/L1General/l1general
- L1GeneralCoordinateDescent
- L1GeneralGrafting
- L1GeneralIteratedRidge
- L1GeneralOrthantWise
- L1GeneralPatternSearch
- L1GeneralPrimalDualLogBarrier
- L1GeneralProjectedSubGradient
- L1GeneralProjectedSubGradient
- L1GeneralProjectedSubGradientBB
- L1GeneralProjection
- L1GeneralSequentialQuadraticProgramming
- L1GeneralSubGradient
- L1GeneralUnconstrainedApx
- l1GeneralSmooth_sub
trainpredict/matLearn2016/helpers/optimization/L1General/l1general/sub
- bfgsUpdate
- epsilonL1
- getSlope
- initialStepLength
- logBarrierNonNeg
- noProgress
- nonNegGrad
- sigmoidL1
- solveNewton
trainpredict/matLearn2016/helpers/optimization/L1General/lossFuncs
trainpredict/matLearn2016/helpers/optimization/L1General/misc
trainpredict/matLearn2016/helpers/optimization/minConf
trainpredict/matLearn2016/helpers/optimization/minConf/minConf
trainpredict/matLearn2016/helpers/optimization/minFunc_2012
trainpredict/matLearn2016/helpers/optimization/minFunc_2012/autoDif
trainpredict/matLearn2016/helpers/optimization/minFunc_2012/logisticExample
trainpredict/matLearn2016/helpers/optimization/minFunc_2012/minFunc
- ArmijoBacktrack
- WolfeLineSearch
- cg
- getOpt
- isLegal
- lbfgs
- lbfgsAdd
- lbfgsProd
- lbfgsUpdate
- lbfgsUpdate
- mchol
- mcholinc
- minFunc
- polyinterp
- precondDiag
- precondUpper
- precondUpper
- taylorModel
trainpredict/matLearn2016/helpers/optimization/minFunc_2012/minFunc/compiled
trainpredict/matLearn2016/multiclass
- ml_classification_bootstrap
- ml_generative_Gaussian
- ml_generative_KDE
- ml_generative_NB
- ml_generative_mixtureGaussian
- ml_generative_mixtureMEP
- ml_generative_student
- ml_multiclass_1v1
- ml_multiclass_1vA
- ml_multiclass_CNN
- ml_multiclass_ECOC
- ml_multiclass_KNN
- ml_multiclass_MLP
- ml_multiclass_SVM
- ml_multiclass_bagging
- ml_multiclass_basis
- ml_multiclass_boosting
- ml_multiclass_decisionTree
- ml_multiclass_generativeGDA
- ml_multiclass_kernel_softmax
- ml_multiclass_logistic
- ml_multiclass_stump
trainpredict/matLearn2016/multilabel
trainpredict/matLearn2016/ordinal
trainpredict/matLearn2016/regression
- ml_regression_ARD
- ml_regression_GAM
- ml_regression_Huber
- ml_regression_KNN
- ml_regression_L1
- ml_regression_L2
- ml_regression_MLP
- ml_regression_NB
- ml_regression_NW
- ml_regression_SVR
- ml_regression_bagging
- ml_regression_basis
- ml_regression_kernel
- ml_regression_local
- ml_regression_mean
- ml_regression_regressOnOne
- ml_regression_student
- ml_regression_stump
- ml_regression_totalL2
- ml_regression_tree
trainpredict/matLearn2016/unsupervised
- ml_unsupervised_DBcluster
- ml_unsupervised_HMM
- ml_unsupervised_LGSSM
- ml_unsupervised_clusterKmeans
- ml_unsupervised_dimRedFA
- ml_unsupervised_dimRedKPCA
- ml_unsupervised_dimRedPCA
- ml_unsupervised_sparseAutoencoder
- ml_visualize_ISOMAP
- ml_visualize_MDS
- ml_visualize_Sammon
- ml_visualize_tSNE
trainpredict/popfeatsel
trainpredict/sqb-0.1/src/MatrixSQB
trainpredict/sqb-0.1/tests
trainpredict/weibull_cox_v_1_1_4
util
- DeleteTempVol
- DiagM
- DuplicationM
- EUCLIDEAN
- EliminationM
- FastUniqueRows
- FindIdentStringsEnum
- GIIread
- RetCellInCellsIndex
- StructFind
- SurfaceReader
- TestVChooseK
- UpperTriangleMatrix
- VChooseK
- WriteTempVol
- addstruct
- allcomb
- allcomb2
- bhattacharyya
- bicor_matrix
- biweight_midcorrelation
- bonf_holm
- bsearch
- calibIsotonicEnsemble
- calibrateScores
- catstruct
- cell2matpadnan
- cellmat_mergecols
- cellmat_mergerows
- centerFigure
- centroid
- choose_rnd
- comp_struct
- compute_percentile
- createVecGeoHalv
- customcolormap
- dload
- dprint
- dsave
- dshuffel
- dsort
- fcneval
- fdr_bh
- fdr_bh_new
- field_matrix2vector
- field_vector2matrix
- findIdx
- findrow
- fisherinv
- fisherz
- get_files
- get_response
- getenvall
- getenvironment2
- getkey
- getrow
- gowerSimilarity
- idiag
- insertrow
- invprctile
- isMemoryTight
- isincluded
- isnanincell
- isotonicRegression
- itril
- itriu
- kde
- kernel_est2D
- knee_pt
- liddell
- list_struct
- logRegCost
- logistic
- lsqisotonic
- maxindx
- mcnemar
- minmax
- movingmean
- munkres
- myfriedman
- mytoeplitz
- nchoosek_m
- nearestSPD
- nk_ComputePercentiles
- nk_CreateStratPermIdx
- nk_ExpVec
- nk_KLS
- nk_KLS2
- nk_NanMatrixAddition
- nk_RemCommaFromStr
- nk_WeightedMedianRows
- nk_softmax
- nm_95confint
- nm_nancount
- nm_nanmax
- nm_nanmean
- nm_nanmedian
- nm_nanmin
- nm_nanplus
- nm_nanquantile
- nm_nansem
- nm_nanstd
- nm_nansum
- nm_nanvar
- nm_normcdf
- nm_stdnormal_cdf
- nm_tiedrank
- normpdf
- notBoxPlot
- orphans.m
- plotboxpos
- plotlines
- plt
- print_struct_params
- probtransform
- quadetest
- quickSort
- quiv
- rank_data
- ranktransform
- resize_img
- rgb
- sample_wor
- sample_wr
- scaledata
- setrow
- size_acc
- slidewin
- split_data
- spm_file
- spm_fileparts
- spm_str_manip
- stdnormal_pdf
- struct2list
- structfind
- tKL
- timestampstr
- txtmenu
- uperms
- vararginoptions
- vbar
- weightedIsotonicFit
- wilcoxon
- wmean
util/+NBP
- SEM_calc
- jitterExamples
- lineExamples
- linearModelExamples
- showCase
- simpleExamples
- statsOptionsExamples
- tInterval_Calc
- tableExamples
util/freesurfer
- ComputeGeodesicProjection
- MRIeuler2Mdc
- MRIextractImage
- MRIfspec
- MRIisBHDR
- MRIisMGH
- MRImdc2euler
- MRIread
- MRIseg2labelxyz
- MRIsegReg
- MRIvol2vol
- MRIvote
- MRIwrite
- MakeGeodesicOuterROI
- PropagateGeodesic
- ReadSiemensPhysio
- Read_Brain_Annotation
- SearchProjectionOnPial
- angles2rotmat
- barsegstats
- bmm_mcvect
- bmm_mcvhist
- bmmcost
- bmmroc
- cc_cut_adf
- cc_cut_dir_adf
- cc_cut_table.m
- check_ROI
- check_ROI_dir
- combine_labels
- compute_lgi
- convert_fieldsign
- convert_unwarp_resample
- cortical_label_adf
- cortical_label_dir_adf
- cortical_labeling_table.m
- createMeshFacesOfVertex
- dice_labels
- dijk
- dtifa
- dtimatrix
- fd3
- find_corresponding_center_FSformat
- fisher_twoclass
- fmri_ldcor
- freesurfer_fread3
- freesurfer_read_surf
- fwrite3
- getFaceArea
- getFacesArea
- getMeshArea
- getOrthogonalVector
- getVerticesAndFacesInSphere
- isInGeodesicROI
- isVertexInRadius
- isdicomfile
- juelichmat2mat
- labelic
- llbmm
- load_analyze
- load_analyze_hdr
- load_csd
- load_dicom_fl
- load_dicom_series
- load_gca
- load_ima
- load_mgh
- load_mgh2
- load_nifti
- load_nifti_hdr
- load_segstats
- lta_read
- make_outer_surface
- make_roi_paths
- mesh_adjacency
- mesh_vertex_nearest
- mksubfov.m
- mri_cdf2p
- mri_kurtosis
- mri_surfrft_jlbr
- mri_zcdf
- mris_display
- peakfinder
- pons_cut_adf
- pons_cut_dir_adf
- pons_cut_table.m
- pred2path
- randb
- read_ROIlabel
- read_all.m
- read_asc
- read_cor
- read_csf_patch.m
- read_curv
- read_curv
- read_eccen_patch.m
- read_freq_patch.m
- read_fscolorlut
- read_genesis_image
- read_label
- read_label_old.m
- read_moviebyu
- read_normals
- read_patch.m
- read_siemens_header
- read_siemens_image
- read_smooth_eccen.m
- read_surf
- read_type
- read_vf
- read_wfile
- readrec
- redo_lgi
- remove_spaces
- reorganize_verticeslist
- ribbon_adf
- ribbon_dir_adf
- ribbon_table.m
- rotmat
- rotmat2angles
- sampleSize
- save_cor
- save_mgh
- save_mgh2
- save_nifti
- ssbloch
- ssblochgrad
- stringunique
- strlen
- subcortical_labeling_table.m
- surf_registration_adf
- surf_registration_stats
- surf_registration_table.m
- talairach_stats_correct
- talairaching_table.m
- taldir
- talmat
- transVertexToNormalAxisBase
- unwarp_init_globals
- unwarp_resample
- unwarp_scanners_table
- vox2rasToQform
- vox2ras_0to1
- vox2ras_1to0
- vox2ras_dfmeas
- vox2ras_ksolve
- vox2ras_rsolve
- vox2ras_rsolveAA
- vox2ras_tkreg
- wm_seg_adf
- wm_seg_dir_adf
- wm_seg_table.m
- write_analyze_hdr
- write_annotation
- write_curv
- write_curv
- write_label
- write_lgi
- write_path
- write_wfile
- xfm_read
visual
- FeatureRelevanceGUI
- bar3
- barwitherr
- bubbleplot.m
- dataHover
- dotdensity
- herrorbar
- nk_OcclusionMapping
- nk_PlotCobWeb
- nk_PlotConfusionMat
- nk_PlotDistributions
- nk_PrintCV2BarChart
- nk_PrintFeatRelev25D
- perf_display
- plot_spider_plot
- plot_spider_plot copy.m
- plotreliability
- radarplot
- return_imgind
- roc2
- rotateticklabel
- schemaball
- schemaballUnit
- spider
- spider_plot
- spider_plot_R2019b
- spider_plot_class.m
- tight_subplot
- violin.m
visual/altmany-export_fig-a2b5d52
- append_pdfs
- copyfig
- crop_borders
- eps2pdf
- export_fig
- fix_lines
- ghostscript
- im2gif
- isolate_axes
- pdf2eps
- pdftops
- print2array
- print2eps
- read_write_entire_textfile
- user_string
- using_hg2
visual/tabpanel2.8.1
| Version | Published | Release Notes | |
|---|---|---|---|
| 1.4.1 | See release notes for this release on GitHub: https://github.com/neurominer-git/NeuroMiner/releases/tag/v1.4.1 |
||
| 1.4 |
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