how to segment and define regions

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dekel vered
dekel vered on 2 Aug 2020
Commented: Image Analyst on 2 Aug 2020
Hi all,
This is a phase image reconstructed by NMR.
There are 5 test tubes in this image. One with the largest diameter, and 4 in shorter diameters inside (marked in black). The circular arches are the phase of the molecules.
I need to define the 4 short test tubes and to remove them, but in a way that the new pixels will have a logical value in accordance to it's neighbors.
I will be happy to get a clue how can I manage doing this
Thanks in advance
  1 Comment
Image Analyst
Image Analyst on 2 Aug 2020
Are they in the same location all the time? If so, use a template mask. Otherwise, if you need to find them, can you attach the image in a .mat file, or attach the gray scale, non-pseudocolored version?
Also, what does "remove" mean to you? You can't have a hole with missing pixels in an image since images must remain rectangular. However you can assign those pixels to some value, like 0.

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