How to sample data at set intervals and then plot?
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ImperialStar
on 5 Jan 2020
Commented: ImperialStar
on 5 Jan 2020
I am currently trying to create code that samples ECG data at certain intervals and extracts the maximum value between each interval. I believe my code does this as the ouput A returns the peaks of the data. However when i try and then plot these peaks it instead plots it as the sample number. E.g. one of my peaks is 257 in amplitude but the graph plots it as the 257th sample instead of the sample corresponding to the max value. I have attched an example of what my code plots. Any help is greatly appreciated!
ECG = load('ECG.csv');
Fs = 350;
frame_duration = 0.5;
frame_len = frame_duration*Fs;
N = length(ECG);
num_frames = floor(N/frame_len);
Time = (0:length(ECG)-1)/Fs; %Number of samples divided by frquency
Amp = ECG(:,1); %ECG Amplitude
hold on
for k = 1:num_frames
frame = ECG((k-1)*frame_len + 1: frame_len*k);
max_val = max(frame);
if (max_val > 100)
A = max_val
figure
plot(Time,Amp,Time(A),Amp(A),'r*')
end
hold off
end
Accepted Answer
Image Analyst
on 5 Jan 2020
You're giving the max value as the index when what you should be getting from max() is the index. And you don't need A at all.
Try
[max_val, indexAtMax] = max(frame);
if (max_val > 100)
hFig = figure
plot(Time,Amp, Time(indexAtMax),Amp(indexAtMax),'r*')
hFig.WindowState = 'maximized'; % Maximize the window, if desired.
3 Comments
Image Analyst
on 5 Jan 2020
Your index is wrong. Try this:
% Read data.
ECG = csvread('ECG.csv');
Fs = 350;
frame_duration = 0.5;
frame_len = frame_duration*Fs;
N = length(ECG);
num_frames = floor(N/frame_len);
Time = (0:length(ECG)-1)/Fs; %Number of samples divided by frquency
Amp = ECG(:,1); %ECG Amplitude
plot(Time, Amp, 'b-', 'LineWidth', 2);
xlabel('Time', 'FontSize', 20);
ylabel('Entire ECG', 'FontSize', 20);
hold on
threshold = 100;
line(xlim, [threshold, threshold], 'Color', 'r', 'LineWidth', 2);
grid on;
for k = 1:num_frames
index1 = (k-1)*frame_len + 1;
index2 = frame_len*k;
frame = Amp(index1 : index2);
fprintf('Extracted frame #%d, from index %d to %d.\n', ...
k, index1, index2);
[max_val, indexAtMax] = max(frame);
originalIndex = indexAtMax + index1 - 1;
fprintf(' Max of %f occurs at index %d of cropped signal, or %d of original signal.\n', ...
max_val, indexAtMax, originalIndex);
if (max_val > threshold)
% Bring up a new figure.
figure
plot(Time,Amp, Time(originalIndex),Amp(originalIndex),'r*')
hold on
line(xlim, [threshold, threshold], 'Color', 'r', 'LineWidth', 2);
xlabel('Time', 'FontSize', 20);
ylabel('Entire ECG', 'FontSize', 20);
grid on;
hFig.WindowState = 'maximized'; % Maximize the window, if desired.
end
hold off
end
More Answers (1)
David Hill
on 5 Jan 2020
ECG = load('ECG.csv');
Fs = 350;
frame_duration = 0.5;
frame_len = frame_duration*Fs;
N = length(ECG);
num_frames = floor(N/frame_len);
Amp = ECG(:,1)'; %ECG Amplitude
Amp = Amp(1:num_frames*frame_len);
Time = (0:length(Amp)-1)/Fs;
amp = reshape(Amp,frame_len,num_frames);
[mamp,idx] = max(amp);
Idx=(find(mamp>100)-1)*frame_len + idx;
plot(Time,Amp,Time(Idx),mamp(Idx),'r*');
2 Comments
David Hill
on 5 Jan 2020
ECG = load('ECG.csv');
Fs = 350;
frame_duration = 0.5;
frame_len = frame_duration*Fs;
N = length(ECG);
num_frames = floor(N/frame_len);
Amp = ECG(:,1)'; %ECG Amplitude
Amp = Amp(1:num_frames*frame_len);
Time = (0:length(Amp)-1)/Fs;
amp = reshape(Amp,frame_len,num_frames);
[mamp,idx] = max(amp);
Idx=(find(mamp>100)-1)*frame_len + idx;
plot(Time,Amp,Time(Idx),Amp(Idx),'r*');
This should work. Could not test without the ECG.csv file.
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