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Using System() to submit cluster job to SLURM but gives "sbatch: command not found" error.
I suspect the command not found is for sbatch. If so, I would suggest hardcoding the location of it in your path. For example ...

3 years ago | 0

Answered
How to use composite objects using spmd
It's not related to your parallel code, the issue is the initialization of mov. This can be reproduced by the following functi...

3 years ago | 0

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Answered
Where we can check the total number of worker instances configured in Matlab parallel server.
Are you using MATLAB job scheduler (MJS) or your own (e.g. PBS)? MJS has a property that specifies the current number of idle w...

3 years ago | 0

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Cluster uses only one node, even though 5 nodes Running (parfor)
Starting a parpool will create very little activity for the workers. It's only once you run a parallel construct (e.g., parfor)...

3 years ago | 0

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How to run .m files in one thread from an app running in a different thread so that I can interact with the app during .m file execution?
@Mitchell Tillman you might consider refactoring the code so that the callbacks call parfeval with backgroundPool, but keep in t...

3 years ago | 0

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Unrecognized function or variable 'nvcc'. with Matlab R2022a
nvcc is a NVIDIA compiler, not a MATLAB function. I suspect what you want is mexcuda.

3 years ago | 0

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Answered
Running parfor on SLURM limits cores to 1
Try changing -n 32 for -c 32 -n is tasks, but with 1 CPU per task (by default). It's possible that cgroups is telling MA...

3 years ago | 0

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Answered
When does what License get reserved when using MATLAB Parallel Server?
My questions lie in, what is the exact sequence of when licenses are reserved and when the job gets scheduled and when the job r...

3 years ago | 0

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Answered
Each PARFOR Worker Writes to the Same File
@Paul Safier since the order of the file doesn't have to be deterministic, use a data queue to write back to the client and have...

3 years ago | 0

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Parallel for loop problem
@Simone Fiumi think of the code running in the parfor as running on some entirely different machine. There is no "debugging" pe...

3 years ago | 1

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Extract variable from function after using parfeval
@Koren Murphy the issue is that you've told MATLAB there are no output arguments (even if there are) F(K)=parfeval(fcn,0,K); T...

3 years ago | 1

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Confirm if Parallel Server is installed on cluster
Hi @Michael Raba. Reach out to me directly and I'll help you work through this.

3 years ago | 0

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Answered
Issue using a parfor loop to control two instruments at the same time
Hi @james ingham, I see a couple of potential issues main1; %<------ Connects to laser and starts connection etc (WORKS FINE) ...

3 years ago | 0

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Answered
Recommended approach to "resetting" the workers for each new parallel computation?
Hi @Mitsu You have the right idea. A couple of quick comments If you have a parallel pool running, then deleting the jobs wil...

3 years ago | 1

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Setting -configCluster- in Matlab 2018b
@Stefano Lombardi I wrote configCluster for your site. Reach out to me direclty if you have any questions regarding how to use ...

3 years ago | 0

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Running parfor on multiple nodes using Slurm
The local scheduler will only spawn workers on the same machine running the MATLAB client (e.g., on a Slurm compute node). In o...

3 years ago | 1

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Answered
parallel pool to increase code speed
Starting a parallel pool doesn't run subsequent MATLAB code in parallel, it simple starts a colletion of headless MATLAB process...

3 years ago | 1

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PARFOR is 10X Slower than FOR
@Paul Safier I believe the problem is that you're calling nested tic/toc. In clipSpacing_HELP, you call tic on line 16 and toc ...

3 years ago | 1

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Answered
How can I make expm running on many cores?
Starting a parallel pool doesn't run subsequent MATLAB code in parallel, it simple starts a colletion of headless MATLAB process...

3 years ago | 2

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Answered
How to limit CPU availabilty to Matlab
Try maxNumCompThreads(10);

3 years ago | 1

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How do I allocate cpu resources to a batch job?
It would help if you could provide an example of the script and how you're running the job. Let's assume you're using PBS, mayb...

3 years ago | 0

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multiple optimization problems under parfor
I'm assuming all of this works fine when you run a for-loop instead of a parfor loop. To address the first warning, I'm not an ...

3 years ago | 1

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Answered
What is going on when I call a function that uses parfor loop inside of a parfor loop in my main script?
The outer parfor-loop is parallelized and the inner parfor-loop is run as a for-loop.

3 years ago | 1

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Can I use GPU instead of CPU to run parfor-loop?
GPU threads aren't divided up by workers. Conversely, one worker controls a GPU at a time.

3 years ago | 0

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How to input global variables in function that is in parloop?
We can agree that if global variables were supported, you wouldn't modify data1 and have that reflected on the client -- that wo...

3 years ago | 0

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Answered
Pausing to Save data and Then Rerun from the Same State
There isn't. parfor blocks MATLAB from anything else. To "stop" the parfor, you'd need to hit Ctrl-C, but then you'd stop the ...

3 years ago | 0

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Answered
MATLAB Cloud. How to use if I have an Institution license
MATLAB has several cloud offerings MATLAB Online (matlab.mathworks.com) Cloud Center (cloudcenter.mathworks.com), running on A...

3 years ago | 1

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Answered
Parrellel server dir() for files local to the server
For starters, you don't want to hard code files/paths in your code. Your code should be functions so that you can pass in root ...

3 years ago | 2

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Answered
Do changes in .m file after batch submission, while the job is queued, take effect for the current run?
The latter. MATLAB attaches all the files it needs with the job. You'll want to delete the job, eg. c = parcluster; j = c.ba...

3 years ago | 1

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Answered
Parallel Computing Toolbox, Pausing, and Hibernation
What you're asking for would require "checkpointing", where an application has the ability to stop midstream and resume later. ...

3 years ago | 0

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